Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K02
(342 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 53 1e-08
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 51 4e-08
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.60
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 3.2
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 4.3
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 4.3
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 4.3
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 4.3
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 5.6
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 24 5.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 5.6
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 24 5.6
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 24 7.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 7.5
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 24 7.5
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 23 9.8
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 23 9.8
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 52.8 bits (121), Expect = 1e-08
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +1
Query: 133 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRA 276
+K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH Q IYTRA
Sbjct: 37 FKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRA 84
Score = 26.6 bits (56), Expect = 1.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 57 VRDKLNNQVLFDKPTYEKLYKEVP 128
V+DK + +FDK +++ KEVP
Sbjct: 12 VKDKAQHATVFDKSIIDRINKEVP 35
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 51.2 bits (117), Expect = 4e-08
Identities = 23/47 (48%), Positives = 36/47 (76%)
Frame = +1
Query: 133 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 273
+K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH Q IYTR
Sbjct: 37 FKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83
Score = 26.6 bits (56), Expect = 1.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 57 VRDKLNNQVLFDKPTYEKLYKEVP 128
V+DK + +FDK +++ KEVP
Sbjct: 12 VKDKAQHATVFDKSIIDRINKEVP 35
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.60
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 112 SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 14
SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 3.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 308 IVYATGSSPLVARV*ITCPWCWTTCLMRP 222
I+Y T ++P++ + +T CW L P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 4.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 142 LACXCGTSLYSFSYVGLSNNTWL 74
LAC G+S Y + G N+ WL
Sbjct: 88 LACSSGSSFYGTLWQGGMNHLWL 110
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 4.3
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 93 YQTTPGCSTCHELFLWTTSSSWLCRHRILP 4
YQ TP HE WT SS L H + P
Sbjct: 156 YQLTPEFMAAHEEKTWTASS--LNSHNLTP 183
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 160 SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 267
+ERL + ++ R AL+EL++ LIKQ QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 4.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 243 DYLFDETFFPKLDECSSR 190
D LF E+F +LD C R
Sbjct: 684 DELFSESFLSRLDNCEKR 701
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 5.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 91 SNNTWLFNLSRTFPLDHFFFLAL 23
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 294 WIIALGRTCVDHLPMVLDYLFDETFFPKLDECSSRQGTS 178
W +L + +P +DY+ ET KL+ QGT+
Sbjct: 176 WNFSLDDMAMFDIPDTVDYILRETGREKLNYIGFSQGTA 214
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.2 bits (50), Expect = 5.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 166 RLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 291
R RG++ R +I +EK +++VV G+ TR TK D
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGE---TRPTKQMD 1589
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 24.2 bits (50), Expect = 5.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 330 FIFFNLYHSLCDWIIALGRTCVDHLPMVLDYLF 232
+++ L+HS DW++ R+ + H + DY++
Sbjct: 113 YVYSPLFHSFQDWVV---RSLLYHPQLEYDYVW 142
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 23.8 bits (49), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 208 ELREKGLIKQVVQHHGQVIYTRATKGDDPVA*TMI*VKKNKNXK 339
E KG+I V++HG Y+ + +PV M V+ K+ K
Sbjct: 180 ETSPKGIIMSAVRNHGCFQYSLHNEKLEPVQVHMQDVQNTKDSK 223
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 66 KLNNQVLFDKPTYEKLYKEVPQXQANHT 149
KL+ +L +KPT+ ++ + + + ANH+
Sbjct: 3815 KLDIGLLMEKPTFYRILQLLCETSANHS 3842
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -3
Query: 118 LYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 14
++ F +G+ N T P +F+ L PPP
Sbjct: 47 IFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 89 KQHLVVQLVTNFSFGPLLLLGFAAT 15
++++VVQ + F PL+LL FA++
Sbjct: 48 EENMVVQFLKQFVKDPLILLLFASS 72
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +1
Query: 142 ITPAVVSERLKVRGSLARRALIEL 213
+ PA++ + ++ R SLA+ L+E+
Sbjct: 191 VLPAIIEQIIECRDSLAQEYLVEV 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,999
Number of Sequences: 5004
Number of extensions: 27325
Number of successful extensions: 100
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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