Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K02
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)               90   5e-19
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)                   29   0.99 
SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)               29   1.3  
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   27   3.0  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   3.0  
SB_46626| Best HMM Match : wnt (HMM E-Value=0)                         27   5.3  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)                   26   9.2  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score = 89.8 bits (213), Expect = 5e-19
 Identities = 41/53 (77%), Positives = 49/53 (92%)
 Frame = +1

Query: 133 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 291
           Y+LITP+VVSERLK+RGSLARRAL+EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 62  YRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +3

Query: 57  VRDKLNNQVLFDKPTYEKLYKEVP 128
           VRDKLNN VLFDK TY+KLYKEVP
Sbjct: 37  VRDKLNNLVLFDKATYDKLYKEVP 60


>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
          Length = 700

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 22/89 (24%), Positives = 42/89 (47%)
 Frame = +1

Query: 7   KDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCTRKSHXYKLITPAVVSERLKVRGS 186
           K+  ++KP++R G  E ++      C L+       T +     L+   + + + +  GS
Sbjct: 306 KELRSSKPKQRVGDIESYMERLECYCDLMK------TPEESKVALLFCGLTAGQYETEGS 359

Query: 187 LARRALIELREKGLIKQVVQHHGQVIYTR 273
              R    +  K L +++V+H+G V YTR
Sbjct: 360 SVARIPKTVEFKVLKEKLVEHYGSVRYTR 388


>SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)
          Length = 389

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = -1

Query: 312 YHSLCDWII---ALGRTCVDH------LPMVLDYLFDETFFPKL 208
           YH+ CDW+      G TC+ H         +L+YLF   F P++
Sbjct: 65  YHAFCDWLFDGSNAGYTCLAHNFKGYDYYFILEYLFTNGFKPEV 108


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 202  VLFSPGNLGPLIFQIRQQV*LACXCGTSLYSFSYVG 95
            ++F  G   PL  Q+++++ +   CG S    S+VG
Sbjct: 1086 LIFFYGFFSPLCIQVKERISITILCGNSDIQSSFVG 1121


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 124 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 41
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_46626| Best HMM Match : wnt (HMM E-Value=0)
          Length = 359

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 76  TRCCLINPRMRNCTRKSHXYKLITPAVVSERLKVRGSLARRALIEL 213
           T C    P   +C  ++    L +P  VS RLK     ARRA + L
Sbjct: 238 TECTCHGPSA-SCVTRTCSQALPSPRAVSNRLKALYDTARRATVYL 282


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 139  ACXCGTSLYSFSYVGLSNNTWLFNLSRTFP 50
            A  CG   +  +Y GL  N W+  ++R  P
Sbjct: 1245 AFRCGKRTFMPNYAGLRGNLWITRITRKKP 1274


>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 79  RCCLINPRMRNCTRKSH-XYKLITPAVVSERLKVRGS 186
           RC  +NP + N  +KS   Y  + PA+ +   +V  S
Sbjct: 209 RCVAVNPMLPNLPKKSQPAYLQVLPAIDAPHFQVHPS 245


>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
          Length = 208

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 88  LINPRMRNCTRKSHXYKLITPAVVSERLKVRGSLARR 198
           +I  R   C  KSH ++  TP   S RL V+G ++R+
Sbjct: 169 IIFVRCYGCGGKSHPHRCKTPVAPSARL-VQGQVSRK 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,106,017
Number of Sequences: 59808
Number of extensions: 222978
Number of successful extensions: 606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)