Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K02
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    81   2e-16
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   3.5  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    26   6.1  
AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical...    26   6.1  
AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical ...    26   6.1  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    26   8.1  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 39/55 (70%), Positives = 45/55 (81%)
 Frame = +1

Query: 133 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 297
           YKLITP+VVSERLKVR SLA+  L EL+ KGL+K VV HHGQV+YTRATK  D +
Sbjct: 61  YKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +3

Query: 57  VRDKLNNQVLFDKPTYEKLYKEV 125
           VRDKLNN VLFD+ TY+KLYKEV
Sbjct: 36  VRDKLNNMVLFDQATYDKLYKEV 58


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = -1

Query: 126 GLPCTVSHTWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 7
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 169 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 273
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 333 VFIFFNLYHSLCDWIIALGRTCVDHLPMVLDYLFDETFFPK 211
           + IFF +Y+ LC  +  +  TCV        Y   + +F K
Sbjct: 43  LLIFFGIYNLLCTVVDLIVPTCVIDYNYAFSYYVVDGYFEK 83


>AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical
           protein Y57A10A.28 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 248 CWTTCLMRPFSLSSMSALLAREP 180
           CW +C++  F+ S +S  L  EP
Sbjct: 62  CWLSCMLMSFAGSFLSCFLLGEP 84


>AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical
           protein K12B6.2 protein.
          Length = 597

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 122 FLVQFLIRGFIKQHLVVQLVTNFSFGPLL 36
           FL  +L+R  +  +  ++L+ NF FG L+
Sbjct: 20  FLTDYLVRSEVSDYYRLRLLVNFLFGLLI 48


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 63  DKLNNQVLFDKPTYEK 110
           ++L NQVLFDKP  EK
Sbjct: 32  EELANQVLFDKPRGEK 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,128,851
Number of Sequences: 27780
Number of extensions: 159532
Number of successful extensions: 429
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)