Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K02
(342 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 66 8e-12
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 65 1e-11
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 64 2e-11
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 57 3e-09
At5g67560.1 68418.m08519 ADP-ribosylation factor, putative ident... 29 1.1
At5g37680.1 68418.m04538 ADP-ribosylation factor, putative ADP-r... 28 1.4
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4... 28 1.9
At4g27630.1 68417.m03971 expressed protein 27 3.3
At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter, put... 27 4.3
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 27 4.3
At1g24706.1 68414.m03104 expressed protein 27 4.3
At5g64950.1 68418.m08170 mitochondrial transcription termination... 26 5.7
At1g19870.1 68414.m02492 calmodulin-binding family protein conta... 26 7.6
At5g50140.1 68418.m06210 ankyrin repeat family protein contains ... 25 10.0
At3g27180.1 68416.m03399 expressed protein 25 10.0
At1g51960.1 68414.m05857 calmodulin-binding family protein conta... 25 10.0
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 65.7 bits (153), Expect = 8e-12
Identities = 30/51 (58%), Positives = 39/51 (76%)
Frame = +1
Query: 133 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKG 285
+KLITP+++S+RL++ GSLARRA+ EL KG I+ V H Q IYTRAT G
Sbjct: 58 FKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATHG 108
Score = 35.1 bits (77), Expect = 0.012
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 60 RDKLNNQVLFDKPTYEKLYKEVPQ 131
++K+NN VLFD+ TY+KL E P+
Sbjct: 34 KEKVNNMVLFDQATYDKLLSEAPK 57
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 64.9 bits (151), Expect = 1e-11
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +1
Query: 133 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 279
+KLITP+++S+R+++ GSLARRA+ EL KGLI+ V H Q IYTRAT
Sbjct: 58 FKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRAT 106
Score = 34.3 bits (75), Expect = 0.022
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 60 RDKLNNQVLFDKPTYEKLYKEVPQ 131
++K+NN VLFD+ TY+KL E P+
Sbjct: 34 KEKVNNMVLFDQGTYDKLLTEAPK 57
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = +1
Query: 133 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 279
+KLITP+++S+R+++ GSLARRA+ EL KG+I+ V H Q IYTRAT
Sbjct: 58 FKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRAT 106
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 60 RDKLNNQVLFDKPTYEKLYKEVPQ 131
++K+NN VLFD+ TY+KL E P+
Sbjct: 34 KEKVNNMVLFDQATYDKLLTEAPK 57
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 57.2 bits (132), Expect = 3e-09
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +1
Query: 133 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 279
+KLITP+++S+RL++ GSLAR+A+ +L KG I+ V H Q I TRAT
Sbjct: 74 FKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 122
Score = 35.1 bits (77), Expect = 0.012
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 60 RDKLNNQVLFDKPTYEKLYKEVPQ 131
++K+NN VLFD+ TY+KL E P+
Sbjct: 50 KEKVNNMVLFDQATYDKLMSEAPK 73
>At5g67560.1 68418.m08519 ADP-ribosylation factor, putative
identical to GP:15450888 ADP-ribosylation factor-like
protein {Arabidopsis thaliana]
Length = 184
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 137 LXLWDFLVQFLIRGFIKQHLVVQLVTNFSFGPLLLLGFAATGSF 6
+ LWD L+ +L F KQ + + L+ + G L+ ATG +
Sbjct: 1 MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGY 44
>At5g37680.1 68418.m04538 ADP-ribosylation factor, putative
ADP-ribosylation factor, Leishmania major, EMBL:LMFP1421
and ADP-ribosylation factor-like protein 1 (ARL1)
(SP:P40616) Homo sapiens; contains PF00025:
ADP-ribosylation factor family
Length = 184
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 137 LXLWDFLVQFLIRGFIKQHLVVQLVTNFSFGPLLLLGFAATGSF 6
+ LWD L+ +L F KQ + + LV + G L+ ATG +
Sbjct: 1 MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGY 44
>At1g54560.1 68414.m06222 myosin, putative similar to myosin
GI:433663 from [Arabidopsis thaliana]
Length = 1529
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +1
Query: 112 CTRKSHXYKLITPAVVSERLKVRGSLARRALIEL----REKGLIKQ 237
C R + +K + V+ + + RG LARR L +L RE G +K+
Sbjct: 847 CHRATLYFKKLKKGVILSQTRWRGKLARRELRQLKMASRETGALKE 892
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -2
Query: 263 ITCPWCWTTCLMRPFSLS---SMSALLAR 186
I P CWTT L PF L SM L++R
Sbjct: 4 ILSPTCWTTLLKHPFILKGFFSMPQLVSR 32
>At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter,
putative similar to SWISS-PROT:Q13183 renal
sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
Length = 540
Score = 26.6 bits (56), Expect = 4.3
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Frame = -2
Query: 251 WCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAG-----VISLXLWDFLVQFLIRGF-I 90
+ W P ++SM+ L + +D A VISL L F++ + + I
Sbjct: 83 FAWWLTEAVPMPITSMTPLFLFPLFGISAADDVANSYMDDVISLVLGSFILALAVEHYNI 142
Query: 89 KQHLVVQLVTNFSF----GPLLLLGFAATGSFL 3
+ L + + F PLLLLG AT +F+
Sbjct: 143 HRRLALNITLVFCVEPLNAPLLLLGICATTAFV 175
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 301 MRLDHRPWSHVCR 263
MR HRPWS +C+
Sbjct: 248 MRSSHRPWSRICQ 260
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 70 NLSRTFPLDHFFFLALPPPDP 8
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
>At5g64950.1 68418.m08170 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 391
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 212 SSMSALLAREPRTFNLSD 159
S +++LL R+PR FNLS+
Sbjct: 196 SQLASLLRRQPRIFNLSE 213
>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
Pfam profile: PF00612 IQ calmodulin-binding motif
Length = 794
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 136 KLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRA 276
KL +V + VRG LARR L LR K +IK G ++ ++A
Sbjct: 212 KLDESVIVVIQAAVRGFLARREL--LRSKKVIKLQAAVRGHLVRSQA 256
>At5g50140.1 68418.m06210 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 535
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 205 IELREKGLIKQVVQHHGQVIYTRATKGDDPV 297
++L + L+K++V+ H ++ + TK D P+
Sbjct: 35 VKLGNEELVKKIVEIHPSLVSSTNTKSDTPL 65
>At3g27180.1 68416.m03399 expressed protein
Length = 518
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 19 AAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCTRKSHXYKLITPAVVSE 165
A+ P S P +S + C L P ++C+ + + L PAVV E
Sbjct: 25 ASAPFVASVPLPPSTSSDSLACSLQCPHFQSCSGCTQEFNLHRPAVVDE 73
>At1g51960.1 68414.m05857 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 351
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 151 AVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRA 276
A V + RGSLAR+AL L KG++K G ++ RA
Sbjct: 102 AAVKIQKVFRGSLARKALRAL--KGIVKLQALVRGYLVRKRA 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,681,337
Number of Sequences: 28952
Number of extensions: 147842
Number of successful extensions: 404
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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