Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J23
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    67   2e-12
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.4  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.4  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   4.1  
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    26   5.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   7.2  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   9.5  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
 Frame = +3

Query: 153 FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVQDK------------ 296
           F  P +    + WGP E      D+PY PFSKGDRLGKI+DW++ Q K            
Sbjct: 5   FKLPELAPVKSAWGPPETEQIGGDIPYAPFSKGDRLGKIADWSVDQPKDGREQRGRQGAF 64

Query: 297 --KYQNKYASQ-FGAGSSYAYFHDEDESTFHLVDTTRVQK 407
             +++++Y +  +GA S + Y H EDES+F ++D   V +
Sbjct: 65  AGRFRDQYQTYGYGASSIFGYQHSEDESSFSVIDRGSVNR 104


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 363  LHHGSMHKTNQPQTVMHICSGTSCLAPLSNHLS 265
            L+H  + + N PQ + H C+  SC    S+ LS
Sbjct: 2930 LYHDELFQAN-PQEIHHACNAVSCFLQASSLLS 2961


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 496 LNKPRERKLGKRWGQRGAPMKIRDASVTVRPTWVTIE 606
           L+KPR  ++ +++ Q+G   KI+      + TWV  E
Sbjct: 46  LDKPRRTRILEKFAQKGLHEKIQGGCGKYQGTWVPSE 82


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 79  WFKIVTYHSELRCRNTYC 132
           W+  V  + ELRC+N YC
Sbjct: 576 WWTPVYVNQELRCKNAYC 593


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 618 EVHIFNRDPCWPYSYRC 568
           +VH +++   WPY+Y C
Sbjct: 375 DVHSYSQSVLWPYAYTC 391


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 388 TLLECKSRISHISVGGLEDSVVVVPXXARTPGGMTTLNK 504
           TL EC   +       L D VVVV   AR+   +T  NK
Sbjct: 17  TLAECIRVVRAGKFASLGDEVVVVVKKARSGSSVTAANK 55


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 351 SMHKTNQPQTVMHICS 304
           SMH ++  Q VMHICS
Sbjct: 820 SMHHSSVVQAVMHICS 835


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 156 ISPIIQDNPTGWGPYEMPDQFRDMPYQ 236
           + PII  NP  W PY     FR  P Q
Sbjct: 20  LPPIILTNPLTWIPYIYRYLFRKTPRQ 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,140
Number of Sequences: 5004
Number of extensions: 62960
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)