Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J23
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0140 - 27982037-27983794                                         40   0.002
11_01_0127 + 1031690-1031952,1032850-1032857,1034679-1034927,103...    36   0.028

>05_07_0140 - 27982037-27983794
          Length = 585

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
 Frame = +3

Query: 147 MRFISPIIQDNPTGWGPYEM---PDQF------RDMPYQPFSKGDRLGKISDWT 281
           M F   ++  NP GWGP +    P           +P+ PFS+ D+LG+I+DWT
Sbjct: 1   MGFDVGVVAFNPEGWGPPDTAPAPASLGGGAAAASIPFAPFSRSDKLGRIADWT 54


>11_01_0127 +
           1031690-1031952,1032850-1032857,1034679-1034927,
           1034938-1035009,1036609-1036724,1037482-1037545,
           1037742-1037773,1037804-1037850,1038627-1038660,
           1039308-1039652,1040425-1040718,1040968-1041232,
           1041359-1041480,1041754-1042059
          Length = 738

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 385 WTLLECKSRISHISVGGLEDSVVVVPXXA-RTPGGMTTLNKPRERKLGKRWGQRGAPMKI 561
           W+  +   R +  SVGG+   +V+    A RTP     L K   R  GKR   RG+  +I
Sbjct: 641 WSSAQRARRFATGSVGGVIKRMVITALPAQRTPNNFDKLQKVLNRGKGKRGRPRGSGKRI 700

Query: 562 RDASVTVRPTWVTIEDMDF 618
              S  VR      E+MD+
Sbjct: 701 AGVSANVRRR--LEEEMDY 717


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,589,066
Number of Sequences: 37544
Number of extensions: 441962
Number of successful extensions: 945
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)