Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J23
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)             106   2e-23
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 28   5.8  
SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_28458| Best HMM Match : DUF326 (HMM E-Value=3.4)                    28   5.8  

>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score =  106 bits (254), Expect = 2e-23
 Identities = 49/96 (51%), Positives = 68/96 (70%), Gaps = 6/96 (6%)
 Frame = +3

Query: 141 GPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKI-SDWTMVQDKKYQ---- 305
           G  +F +P IQDNP GWGP  +P  F+D+PYQPFSK DRLGK+   +T    +K +    
Sbjct: 3   GKAKFCAPEIQDNPDGWGPCSVPTAFKDIPYQPFSKADRLGKVWLVFTYTDFRKVRFVPG 62

Query: 306 NKYASQFGAGSS-YAYFHDEDESTFHLVDTTRVQKP 410
           +KY SQFG G+  ++Y+H+EDE++F LVDT+R Q+P
Sbjct: 63  DKYQSQFGTGNQMFSYYHEEDETSFQLVDTSRTQRP 98



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
 Frame = +1

Query: 484 GMTTLNKPRERKLGKRWG-------QRGAPMKIRDASVTVRPTWVTIED--MDFPRLAKL 636
           G  T NK  +RK+ + WG       ++   M  R ASVTVR  W  +ED  +DFPRL+KL
Sbjct: 137 GRDTRNK-FQRKMQRNWGGGRHWSDKKTGGMHKRVASVTVREEWKVLEDGELDFPRLSKL 195

Query: 637 SLPGI 651
           +LP +
Sbjct: 196 NLPNV 200


>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 374 LSPGGHYSSAKAVSVISAWAGSRTAWSWCQXXHVL 478
           L  GGH S+ + V+++     +R AWS+ +  +VL
Sbjct: 576 LCHGGHGSALRMVNIVMVPTVARVAWSYLENNNVL 610


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = -3

Query: 432 AHADMTDTAFALE*CPPGERCFHLHHGSMHKTNQPQTVMHICSG--TSCLAPLSNHLSCL 259
           A  D+T +    E  PP +   H+ H   H TN        C G    C+   S   SC+
Sbjct: 132 ATKDITSSTVKKETVPPPQ-VHHMIHPRCHGTNS-------CRGKCVDCMQVASERYSCM 183

Query: 258 IDRLC 244
            DR C
Sbjct: 184 CDRYC 188


>SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 570 CITNLHRCTTLTPPLTKLAFTWL 502
           CI  L +C  L PPLT L   WL
Sbjct: 569 CINFLAQCLLLPPPLTGLHLLWL 591


>SB_28458| Best HMM Match : DUF326 (HMM E-Value=3.4)
          Length = 157

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 570 CITNLHRCTTLTPPLTKLAFTWL 502
           CI  L +C  L PPLT L   WL
Sbjct: 58  CINFLAQCLLLPPPLTGLHLLWL 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,533,896
Number of Sequences: 59808
Number of extensions: 516519
Number of successful extensions: 1061
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)