Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J23
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44320.1 68418.m05427 eukaryotic translation initiation facto...    32   0.38 
At4g20980.1 68417.m03037 eukaryotic translation initiation facto...    31   0.51 
At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase, pu...    29   3.6  
At5g10060.1 68418.m01165 expressed protein                             28   4.7  
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ...    28   6.2  
At1g68380.1 68414.m07811 expressed protein contains Pfam profile...    28   6.2  
At5g35980.1 68418.m04333 protein kinase family protein contains ...    27   8.2  
At3g20680.1 68416.m02617 expressed protein                             27   8.2  

>At5g44320.1 68418.m05427 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 588

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
 Frame = +3

Query: 177 NPTGWGPYEMPDQ----------FRDMPYQPFSKGDRLGKISDWT 281
           N  GWGP +  D             ++P+  FS+ ++LG+++DWT
Sbjct: 14  NSDGWGPPDASDTSSTSVAAANLLPNVPFASFSRSEKLGRVADWT 58


>At4g20980.1 68417.m03037 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 591

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 222 DMPYQPFSKGDRLGKISDWT 281
           ++P+  FS+ D+LG+++DWT
Sbjct: 43  NVPFASFSRSDKLGRVADWT 62


>At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase,
           chloroplast precursor (40 kDa thylakoid lumen PPIase, 40
           kDa thylakoid lumen rotamase) [Spinacia oleracea]
           SWISS-PROT:O49939
          Length = 437

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 147 MRFISPIIQDNPTGWGPYEMPDQFRDMP-YQPFSKGDRLGKISDWTMVQD 293
           ++++  I +D   G+ PYE+P+++R+MP  +  +  D   KI D   ++D
Sbjct: 207 LKYVGGIEEDMVDGF-PYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIED 255


>At5g10060.1 68418.m01165 expressed protein
          Length = 469

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 108 TTMSE-HVLPAEGPMRFISPIIQDNPTGWGPYE-MPDQFRDMPYQPFSKGDRLGKISDWT 281
           TT  + HV+P   P +F+ P + +NP  +G    MP      P  P   G++  +I    
Sbjct: 385 TTQGQYHVIPNPPPPQFLKPPVMNNPYAFGNIPLMPPGLPPPPPPPHLIGNQQPQIPQSN 444

Query: 282 MVQDKK 299
             Q  +
Sbjct: 445 SAQQSQ 450


>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
           WD-40 repeats (PF00400); similar to pre-mRNA splicing
           factor PRP17 (SP:O60508) [Homo sapiens]
          Length = 457

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 129 LPAEGPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISD 275
           +P   P R++S   +           PDQ  D+  +P+S    LG ISD
Sbjct: 76  VPVPVPGRYVSKRERSLLASLSTIPTPDQSSDLSQKPYSSPTVLGSISD 124


>At1g68380.1 68414.m07811 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 392

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 614 SISSIVTHVGLTVTDASRIFIGAPR*PHLLPSLRSRGLFNVVIP 483
           S+  + +   LT+   S++F   P  P L PS +  GL   +IP
Sbjct: 48  SLQGLSSPSSLTIQSVSQLFFVTPPPPILSPSFQDNGLDMFLIP 91


>At5g35980.1 68418.m04333 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 956

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 237 PFSKGDRLGKISDWTMVQDKKYQ-NKYASQFGAGSSYAYF 353
           P+S  +  G I  +    D   Q N Y S  G G+ +AY+
Sbjct: 526 PYSHANSYGSIGSYGSYNDGTIQDNSYGSYGGTGNMFAYY 565


>At3g20680.1 68416.m02617 expressed protein
          Length = 338

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 387 PPGERCFHLHHGSMHKTNQPQTVMHICSGTSCLAPLSNHL 268
           PP  R FHLH  S   + Q   + H  + T   APL + L
Sbjct: 26  PPNSRIFHLHF-SKSLSQQHSKLNHKSTTTRLFAPLCSSL 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,431,781
Number of Sequences: 28952
Number of extensions: 340511
Number of successful extensions: 722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)