Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J16
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   134   1e-32
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   132   3e-32
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    28   1.3  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   6.7  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   8.9  

>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  134 bits (324), Expect = 1e-32
 Identities = 58/86 (67%), Positives = 68/86 (79%)
 Frame = -1

Query: 381 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTG 202
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KAKRR+ TG
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 201 TGRMXHLKIVRRRFRNGFKERETXAA 124
           TGRM +LK V R F+NGF+  +  AA
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKPAAA 86


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  132 bits (320), Expect = 3e-32
 Identities = 57/86 (66%), Positives = 68/86 (79%)
 Frame = -1

Query: 381 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTG 202
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KAKRR+ TG
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 201 TGRMXHLKIVRRRFRNGFKERETXAA 124
           TGRM +LK V R F+NGF+  +  +A
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPTSA 86


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 527 IRKGPNKVGFIGLLQPFSDAIKLFTK 604
           + KG   VGF G L PF D+I  F K
Sbjct: 587 VPKGFQLVGFYGTLGPFMDSIGFFIK 612


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 173 TIFK*XMRPVPVXFLRLAFTDQW*DRNFAAGYPHWAHF 286
           T+F   +  +PV  +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -1

Query: 345 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 262
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,782
Number of Sequences: 5004
Number of extensions: 25905
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)