Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J16
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...   131   5e-31
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...   130   9e-31
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...   130   1e-30
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    29   3.0  
02_04_0293 + 21644415-21644533,21644686-21645118                       28   5.2  

>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score =  131 bits (316), Expect = 5e-31
 Identities = 55/86 (63%), Positives = 70/86 (81%)
 Frame = -1

Query: 399 IVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAK 220
           ++ S  + KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA 
Sbjct: 16  LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAI 75

Query: 219 RRKXTGTGRMXHLKIVRRRFRNGFKE 142
           RRK TGTGRM +++ V RRF++ F+E
Sbjct: 76  RRKTTGTGRMRYMRHVPRRFKSNFRE 101


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score =  130 bits (314), Expect = 9e-31
 Identities = 55/80 (68%), Positives = 67/80 (83%)
 Frame = -1

Query: 381 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTG 202
           M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRK TG
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60

Query: 201 TGRMXHLKIVRRRFRNGFKE 142
           TGRM +++ V RRF++ F+E
Sbjct: 61  TGRMRYMRHVPRRFKSNFRE 80


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score =  130 bits (313), Expect = 1e-30
 Identities = 55/80 (68%), Positives = 67/80 (83%)
 Frame = -1

Query: 381 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTG 202
           M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRK TG
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60

Query: 201 TGRMXHLKIVRRRFRNGFKE 142
           TGRM +L+ V +RF++ F+E
Sbjct: 61  TGRMRYLRHVPKRFKSNFRE 80


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = -1

Query: 327 CRRCG--RSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTGTGRMXHLKIVRRRFRN 154
           C  CG  R  +      CA C        SY+  V+    K +  GR  HL   + +++ 
Sbjct: 530 CNLCGMERLLFEPPPRFCALCFKIINSTGSYYVEVENGNDKSSICGRCHHLSSAKAKYQK 589

Query: 153 GFKERETXAAQE 118
            F   ET A  E
Sbjct: 590 RFSYAETDAEAE 601


>02_04_0293 + 21644415-21644533,21644686-21645118
          Length = 183

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 321 RCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTGTG 196
           RCG   + +Q   C++     A  R  +W ++  RR+  G G
Sbjct: 29  RCGHCHHRLQHRYCSELYPRVAAYRRCNWCLREGRRRGGGGG 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,907,063
Number of Sequences: 37544
Number of extensions: 168405
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)