Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_J16
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 29 3.1
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 28 5.4
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 28 7.1
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 28 7.1
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 28 7.1
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033) 27 9.4
SB_33227| Best HMM Match : DEP (HMM E-Value=0.042) 27 9.4
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1) 27 9.4
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = -1
Query: 240 HWSVKAKRRKXTGTGRMXHLKIVRRRFRNGFKERETXAAQE 118
+WS+KAKRR TGTGRM HLK+V RRF+NGF+E +Q+
Sbjct: 2 NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEGTQAKSQK 42
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Frame = -1
Query: 351 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWSVKAKRRKXTGTGRMXHLKI 175
R NK C CG S QKS C G + + HW+ + K G
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQGPAPRGR--- 260
Query: 174 VRRRFRNGFKERETXAAQEGCS 109
RR RN K++ + E S
Sbjct: 261 GRRGNRNKSKQQINTLSNENAS 282
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Frame = -1
Query: 351 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWSVKAKRRKXTGTGRMXHLKI 175
R NK C CG S QKS C G + + HW+ + K G
Sbjct: 43 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQGPTPRGR--- 99
Query: 174 VRRRFRNGFKERETXAAQEGCS 109
RR RN K++ + E S
Sbjct: 100 GRRGNRNKSKQQINTLSNENAS 121
>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Frame = -1
Query: 351 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWSVKAKRRKXTGTGRMXHLKI 175
R NK C CG S QKS C G + + HW+ + K G
Sbjct: 135 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPPGPTPRGR--- 191
Query: 174 VRRRFRNGFKERETXAAQEGCS 109
RR RN K++ + E S
Sbjct: 192 GRRGNRNKSKQQINTLSNENAS 213
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Frame = -1
Query: 351 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWSVKAKRRKXTGTGRMXHLKI 175
R NK C CG S QKS C G + + HW+ + K G
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQGPTPRGR--- 260
Query: 174 VRRRFRNGFKERETXAAQEGCS 109
RR RN K++ + E S
Sbjct: 261 GRRGNRNKSKQQINTLSNENAS 282
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -1
Query: 351 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWSVKAKRRKXTG 202
R NK C CG S QKS C G + + HW+ + K G
Sbjct: 217 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQG 267
>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 819
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 297 CDMTIYHIFCITYGSYFGA 353
CD +IYHI+ + Y ++GA
Sbjct: 355 CDSSIYHIYRLKYAVHYGA 373
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -1
Query: 351 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWSVKAKRRKXTG 202
R NK C CG S QKS C G + + HW+ + K G
Sbjct: 218 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQG 268
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 263 LQQNYDPTTGQ*RLSAGRXLELAAXVI*RLSGGASVMVLKKGKPTPPK 120
+Q+ Y PT+G + L++ + GAS+ K G P P +
Sbjct: 410 MQRKYSPTSGPSSYKQKKHLQVTLSSAANTTKGASLPATKSGPPVPKR 457
>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
Length = 311
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 195 RMXHLKIVRRRFRNGFKERETXAAQEGCSXVMNQ 94
+M H K++ RNG ERE CS +Q
Sbjct: 221 QMDHWKVLEEELRNGINEREKELEMLRCSTEEDQ 254
>SB_33227| Best HMM Match : DEP (HMM E-Value=0.042)
Length = 765
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 228 KAKRRKXTGTGRMXHLKIVRRRFRNGFKERETXAA 124
K KRR G G H K VRR+ +GF+ R+ A
Sbjct: 134 KKKRRSFDGWG--LHSKSVRRKSYHGFRSRDKMVA 166
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 228 KAKRRKXTGTGRMXHLKIVRRRFRNGFKERETXAA 124
K KRR G G H K VRR+ +GF+ R+ A
Sbjct: 349 KKKRRSFDGWG--LHSKSVRRKSYHGFRSRDKMVA 381
>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
Length = 364
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -3
Query: 271 WISCSKITILPLVSEG*AQEXYWNWPHXSF 182
W++C K+ +LP+ ++ Y W + F
Sbjct: 136 WVNCDKVRLLPMRADEVGARVYARWTNGQF 165
>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -3
Query: 271 WISCSKITILPLVSEG*AQEXYWNWPHXSF 182
W++C K+ +LP+ ++ Y W + F
Sbjct: 297 WVNCDKVRLLPMRADEVGARVYARWTNGQF 326
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,679,081
Number of Sequences: 59808
Number of extensions: 197452
Number of successful extensions: 583
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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