Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J16
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi...   132   2e-31
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi...   129   1e-30
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo...   126   2e-29
At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putativ...    36   0.017
At5g16940.1 68418.m01985 expressed protein contains Pfam profile...    29   3.3  
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai...    29   3.3  
At1g54480.1 68414.m06214 leucine-rich repeat family protein cont...    28   4.4  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    27   7.7  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    27   7.7  

>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
           to SP:Q43292 from [Arabidopsis thaliana]
          Length = 95

 Score =  132 bits (319), Expect = 2e-31
 Identities = 57/80 (71%), Positives = 68/80 (85%)
 Frame = -1

Query: 381 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTG 202
           MTKGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA RRK TG
Sbjct: 1   MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 201 TGRMXHLKIVRRRFRNGFKE 142
           TGRM +L+ V RRF+ GF+E
Sbjct: 61  TGRMRYLRNVPRRFKTGFRE 80


>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
           to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
          Length = 95

 Score =  129 bits (312), Expect = 1e-30
 Identities = 56/80 (70%), Positives = 67/80 (83%)
 Frame = -1

Query: 381 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTG 202
           M KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA RRK TG
Sbjct: 1   MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 201 TGRMXHLKIVRRRFRNGFKE 142
           TGRM +L+ V RRF+ GF+E
Sbjct: 61  TGRMRYLRNVPRRFKTGFRE 80


>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
           identical to GB:Q43292
          Length = 95

 Score =  126 bits (303), Expect = 2e-29
 Identities = 55/80 (68%), Positives = 66/80 (82%)
 Frame = -1

Query: 381 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTG 202
           M KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA RRK TG
Sbjct: 1   MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 201 TGRMXHLKIVRRRFRNGFKE 142
           TGRM +L+ V RRF+  F+E
Sbjct: 61  TGRMRYLRNVPRRFKTCFRE 80


>At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putative
           similar to NADH-ubiquinone oxidoreductase chain 1 (EC
           1.6.5.3) (Swiss-Prot:Q01300) [Petunia hybrida]
          Length = 99

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 512 LGYIXIRKGPNKVGFIGLLQPFSDAIKLFTKXRTYPN 622
           + ++  RKGP+ VG  GLLQP +D  KL  K    P+
Sbjct: 1   MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPS 37


>At5g16940.1 68418.m01985 expressed protein contains Pfam profile
           PF04828: Protein of unknown function (DUF636)
          Length = 135

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 405 FRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKS 286
           F ++   K    T +FG    K HT C+ CG +S++I +S
Sbjct: 52  FELLDDSKDFITTYTFGTHTAK-HTFCKVCGITSFYIPRS 90


>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain
          Length = 215

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 333 TLCRRCGRSSYHIQK-SKCAQCGY 265
           T C RCG  +YH Q  + C  CG+
Sbjct: 186 TSCSRCGLITYHNQTGTSCCSCGF 209


>At1g54480.1 68414.m06214 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]
          Length = 550

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -1

Query: 300 HIQKSKCAQCGYPAAKLRSYHWSVKAKRRKXTGTGRMXHLKIVRRRFRNGFKERET 133
           H+  S        +  L   ++S K  RR  TG   + HLK+    F   F  RET
Sbjct: 47  HLPSSMGEMVNITSLDLSYNNFSGKLPRRFVTGCFSLKHLKLSHNNFSGHFLPRET 102


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 384 KMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQC 271
           K+ + T+S  +R+ K  + C RCG++ +   K  C  C
Sbjct: 157 KVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 384 KMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQC 271
           K+ + T+S  +R+ K  + C RCG++ +   K  C  C
Sbjct: 157 KVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,840,597
Number of Sequences: 28952
Number of extensions: 136453
Number of successful extensions: 310
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)