Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_J15
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 103 2e-23
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.14
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 2.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 3.1
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.1
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 4.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 5.4
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 7.2
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 7.2
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 103 bits (247), Expect = 2e-23
Identities = 50/140 (35%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Frame = +3
Query: 120 NKRNSGLADKVHSKRKAEINK--KKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAV 293
NK++ + + H R+A++ K N F+ + K V G++ K +G PGVSR
Sbjct: 26 NKKSRTRSTESHEDRQAKVQKIQSDFNLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGE 85
Query: 294 QKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIYNLAD 473
+ R+ T+G E+K N++ IDRR GE N LS E+KM+ RF+ E+ ++ +K+ +YNL
Sbjct: 86 ELRRRTIGAELKKRNRSGAIIDRRFGENNPHLSVEEKMLERFSREQ-QRRSKRELYNLDA 144
Query: 474 DEILTHRGXTLEQIEKFDDP 533
+++LTH L I+ F++P
Sbjct: 145 EDVLTHGNRPLSDIDSFEEP 164
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.1 bits (67), Expect = 0.14
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 2/139 (1%)
Frame = +3
Query: 111 KVKNKRNSGLADKVH--SKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRA 284
KV +R + L +++ +KRK E KKI E +++K L K+ + +
Sbjct: 563 KVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAE 622
Query: 285 KAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIYN 464
+A QK E E + + R +K +L + + + ER K+ K+
Sbjct: 623 QAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQ--Q 680
Query: 465 LADDEILTHRGXTLEQIEK 521
AD E + E+ EK
Sbjct: 681 EADREKMAREQRLREEEEK 699
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 333 MNKTNTFIDRRIGEKNNQLSAE-DKMIA-----RFAAERVKQHNKKSI--YNLADDEILT 488
+ K +F++ I E N + + DK + R++ + V K+S YN ++++ T
Sbjct: 809 LEKIESFLENSIAELQNSVREDFDKQTSSLAQLRYSIQNVAHAQKESEVKYNELNEQVKT 868
Query: 489 HRGXTLEQIEKFDD 530
G +EKF+D
Sbjct: 869 LEGYVETVLEKFND 882
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 99 IKMAKVKNKRNSGLADKVHSKRKAEINKKKINPFEVHVNR 218
I+ K N NS LADK+ R E +K +++ H+NR
Sbjct: 756 IEKNKEINVLNSELADKLAQIRHLESDKMELDKLVHHLNR 795
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -3
Query: 408 SFYLQPTTGCSSHQYDDQ*MCSSYSSASFLCPMSLFSSVQL 286
SFY P+T + +Y D Y AS CP L S QL
Sbjct: 342 SFYSLPSTVIGNPKYKDIQAAYLYYYASDSCPKDLSSESQL 382
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/95 (20%), Positives = 46/95 (48%)
Frame = +3
Query: 114 VKNKRNSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAV 293
V+ + +S + V S + + +I E + E+++ G++ + ++ +P +
Sbjct: 324 VQQEASSSEEEAVKSLPETQRTTSRIETQEEEIKEEEME--GEEEEEEEEVPNYESENEL 381
Query: 294 QKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAE 398
+ + L + + ++F+D + E+NN LSAE
Sbjct: 382 EDKVGDLSLSLGV---ASSFVDEMLRERNN-LSAE 412
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 144 DKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRK 305
DK SK +KK + + + +E++ KK+K+D+ S K+ KRK
Sbjct: 701 DKQASKASEAKDKKSLAKRKKQMEKEEVPRAYKKTKNDRLSNKKSTKKSKSKRK 754
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 118 KTSAIQD*LIKFTVREKQRSTKRKSIRLRCM*IVKKLKFWGRN 246
K+S ++ + +RE++R+ + ++ + CM KLK + RN
Sbjct: 311 KSSVVKTCCTRCLLRERKRNARSQATKDACMPNYTKLKAYERN 353
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/109 (17%), Positives = 48/109 (44%)
Frame = +3
Query: 129 NSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRKE 308
+ +AD+ + K+ I + + + K+KV GKK + +A ++R E
Sbjct: 75 SDNIADEENDNHKSTITYGTLIVGDDKFSNGKLKVAGKKRGPTDVFGALKHLEAKKRRIE 134
Query: 309 TLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKS 455
++ E + + + R + + + +++ + + + R ++ KKS
Sbjct: 135 SMDEEKRRKIEESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEKEKKKS 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,459
Number of Sequences: 5004
Number of extensions: 40875
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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