Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_J15
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 79 4e-15
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 35 0.065
01_06_1058 - 34147025-34147069,34147190-34147339,34147983-341481... 33 0.15
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 31 0.60
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 29 2.4
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 29 4.2
06_01_0851 - 6477629-6478810 29 4.2
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495 28 7.4
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 7.4
>03_05_0223 -
22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 78.6 bits (185), Expect = 4e-15
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Frame = +3
Query: 192 NPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLGTEMKLMNKTNTFIDRRIG 371
NPFE +R K VLGKK K ++ G +R++A+ KR+ TL E + K++ F DRRIG
Sbjct: 57 NPFEAIWSRRKFDVLGKKRKGEERRIGRARSEAIHKRENTLLKEFEQSAKSSVFQDRRIG 116
Query: 372 EKNNQLSAEDKMIARFAAERVKQHNKKSIYNLAD---DEILTHRGXTLEQIEKFDD 530
E++ L DK+I R E + + ++S YNL+D DE+ H +L + FD+
Sbjct: 117 ERDETLPEFDKVILRQQREHMAKLKRESKYNLSDDEEDEVDVHLPHSLSGKDDFDE 172
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 34.7 bits (76), Expect = 0.065
Identities = 25/96 (26%), Positives = 45/96 (46%)
Frame = +3
Query: 240 KKSKHDKGLPGVSRAKAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARF 419
KK K DKG S K+ +K K LG + + D + +KN++ +ED A++
Sbjct: 224 KKGKKDKGSDAKSHGKSSRKIK--LGHD-----SDSDHDDNKKKKKNSRYGSEDDSEAKY 276
Query: 420 AAERVKQHNKKSIYNLADDEILTHRGXTLEQIEKFD 527
++ +H K S ++ DD H+ ++ + D
Sbjct: 277 DEKKHSKHLKNSRHDTDDDSESDHKNAKCKKSSRHD 312
>01_06_1058 -
34147025-34147069,34147190-34147339,34147983-34148117,
34148391-34148449,34149142-34149258,34149448-34149625,
34149715-34149798,34150133-34150201,34150385-34150525,
34150781-34150873,34151338-34151466,34152033-34152371,
34152624-34152674
Length = 529
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +3
Query: 216 REKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLGTEMK-LMNKTNTFIDR---RIGEKNN 383
R ++ V K K +KGL G S+ KR+E + + L+ K +D R+ +N
Sbjct: 105 RRRLSVRDLKEKFEKGLSGASKLSEEAKRREAASLDRQVLLKKLRDVLDTLKGRVAGRNR 164
Query: 384 QLSAEDKMIARFAAERVKQHNKKSIYNLAD 473
+ E + A ++ Q + IY A+
Sbjct: 165 DDADEAISLVEALAVQLTQREGELIYEKAE 194
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 174 INKKKINPFEVHVNREKIKVLGKKSKHD 257
INK++I+ F VHV+ E + LG KS+ D
Sbjct: 1078 INKQEIDDFTVHVDSENLVPLGNKSEID 1105
>04_03_0496 +
16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 195 PFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLG 317
PF+V R +++ L S+ +G+PG + AKA E++G
Sbjct: 627 PFQVEKTRIQVQQLHNFSREQQGMPGPTTAKADLDIPESVG 667
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 351 FIDRRIGEKN--NQLSAEDKMIARFAAERVKQHNKKSIYNL 467
FI + E++ +L+ +D ++A+ E V +NKK +Y+L
Sbjct: 537 FIHAKYAERDYVRKLNMDDSLVAQQMWENVSSNNKKGVYSL 577
>06_01_0851 - 6477629-6478810
Length = 393
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 495 LYVLISRHLPNCIYSFYCVVSLFQQRISQSF 403
L VL ++ L NC S+YC+ ++ +++ Q F
Sbjct: 331 LKVLKAKGLLNCDLSYYCIAAMSEEKFVQRF 361
>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
Length = 728
Score = 27.9 bits (59), Expect = 7.4
Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 1/165 (0%)
Frame = +3
Query: 144 DKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLGTE 323
D S++ E N + PF+VH E + K G + + K E +
Sbjct: 423 DATGSRQFLETNYSNMEPFDVHATSEDEGDTSLEGLKQKVELGKKKMSILYKEFEAERSA 482
Query: 324 MKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIYNLADDEILTHRGXT 503
+ + R+ E+ + E R E+ H++++I L D +LT R
Sbjct: 483 SAVAASEAMAMINRLQEEKASMHMEALQYLRMMEEQA-DHDQEAIERLND--LLTEREKE 539
Query: 504 LEQIE-KFDDPRSXXXXXXGXAYGGLXYDFVAEGHFGGGMLSXTD 635
+ +E + D+ R G +DF +G G+L +D
Sbjct: 540 MLDLEAELDNYRRLHEPF------GCKFDF-TDGDMASGVLDSSD 577
>02_04_0622 -
24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 123 KRNSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGK 242
+R+ LAD ++ ++I +K + P VH +E ++ + K
Sbjct: 237 ERSRSLADATCTQGDSDITEKPVEPIRVHSEKELLREMEK 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,029
Number of Sequences: 37544
Number of extensions: 232032
Number of successful extensions: 550
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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