Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_J15
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g69070.1 68414.m07903 expressed protein 88 5e-18
At3g43930.1 68416.m04702 expressed protein predicted proteins, A... 32 0.29
At5g14660.2 68418.m01718 peptide deformylase, chloroplast / poly... 32 0.38
At5g14660.1 68418.m01717 peptide deformylase, chloroplast / poly... 32 0.38
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 31 0.88
At4g31115.1 68417.m04416 expressed protein supported by full len... 31 0.88
At3g23740.1 68416.m02985 expressed protein 31 0.88
At4g13740.1 68417.m02133 expressed protein 30 1.2
At1g20400.1 68414.m02544 myosin heavy chain-related 30 1.5
At2g22560.1 68415.m02674 kinase interacting protein-related simi... 29 2.0
At2g30470.1 68415.m03711 transcriptional factor B3 family protei... 29 3.5
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 29 3.5
At1g56660.1 68414.m06516 expressed protein 29 3.5
At1g80810.1 68414.m09481 expressed protein similar to androgen-i... 28 4.7
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 27 8.2
>At1g69070.1 68414.m07903 expressed protein
Length = 901
Score = 87.8 bits (208), Expect = 5e-18
Identities = 52/126 (41%), Positives = 71/126 (56%)
Frame = +3
Query: 102 KMAKVKNKRNSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSR 281
KM K NK+ KA+ K NPFE +R K +LGKK K ++ VSR
Sbjct: 6 KMKKKPNKKGERRMGPDAVAMKAKTQKVD-NPFESIRSRRKFDILGKKRKGEERFVSVSR 64
Query: 282 AKAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIY 461
+AV KRK TL E + K++ F+D+RIGE+N++L DK I R +R + KKS+Y
Sbjct: 65 TRAVDKRKNTLEKEYEQSLKSSVFLDKRIGEQNDELGEFDKGIIRSQRQRQLKLAKKSMY 124
Query: 462 NLADDE 479
NL+D E
Sbjct: 125 NLSDGE 130
>At3g43930.1 68416.m04702 expressed protein predicted proteins,
Arabidopsis thaliana; expression supported by MPSS
Length = 404
Score = 32.3 bits (70), Expect = 0.29
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +3
Query: 216 REKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSA 395
R I+ LGK+S D+ P R K V+ K+T+G + ++ +D + S
Sbjct: 184 RTMIENLGKESPTDRTRPHKERQKIVESAKKTMGKTLIQPLNLSSLLDSISWTISEPTST 243
Query: 396 EDKMIARFA-AERVKQHNKKSIYNLADDEILTHRGXTLEQIEKFD 527
+I F+ + +++ + + ++ ++ TH L + E+ +
Sbjct: 244 ASVIIDSFSNNDDIERKSLSAFFDAKSNDSFTHSMRLLTESERME 288
>At5g14660.2 68418.m01718 peptide deformylase, chloroplast /
polypeptide deformylase 1B (PDF1B) identical to
SP|Q9FUZ2 Peptide deformylase, chloroplast precursor (EC
3.5.1.88) (PDF) (Polypeptide deformylase) {Arabidopsis
thaliana}; supporting cDNA
gi|11320965|gb|AF269165.1|AF269165
Length = 273
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 216 REKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLG 317
RE+++ L KK + GLP R +A QKRK +G
Sbjct: 236 REELEALEKKYEEKTGLPSPERVEARQKRKAGVG 269
>At5g14660.1 68418.m01717 peptide deformylase, chloroplast /
polypeptide deformylase 1B (PDF1B) identical to
SP|Q9FUZ2 Peptide deformylase, chloroplast precursor (EC
3.5.1.88) (PDF) (Polypeptide deformylase) {Arabidopsis
thaliana}; supporting cDNA
gi|11320965|gb|AF269165.1|AF269165
Length = 273
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 216 REKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLG 317
RE+++ L KK + GLP R +A QKRK +G
Sbjct: 236 REELEALEKKYEEKTGLPSPERVEARQKRKAGVG 269
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding protein,
C-terminal domain
Length = 1060
Score = 30.7 bits (66), Expect = 0.88
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Frame = +3
Query: 102 KMAKVKNKRNSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSR 281
K A+++ KR + LADK + +K + R ++ L + + ++ + + R
Sbjct: 770 KAAEIEAKRATELADKARTDAVTSQKEKSES------QRLAMERLAQIERAERQVENLER 823
Query: 282 AKA-VQKRKETLG-TEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKS 455
K ++ + L +EM+ ++K T ++ R+ E+ ++ + +I A+R HN KS
Sbjct: 824 QKTDLEDELDRLRVSEMEAVSKV-TILEARVEEREKEIGS---LIKETNAQRA--HNVKS 877
Query: 456 IYNLADDEILTH 491
+ L D+E H
Sbjct: 878 LEKLLDEERKAH 889
>At4g31115.1 68417.m04416 expressed protein supported by full length
cDNA gi:21436034 from [Arabidopsis thaliana]
Length = 250
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 150 VHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQ 296
+ S +KA I+ + ++ +N EK + KH G+ V AKA+Q
Sbjct: 52 ISSLKKANISASRKQRIKLEINGEKELTFSEFLKHPSGMEAVINAKALQ 100
>At3g23740.1 68416.m02985 expressed protein
Length = 542
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 345 NTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIYNLADDEIL 485
NTF+D +GE+N ++ + A+ +AE ++ H+ + L D ++
Sbjct: 349 NTFVDNLVGEEN--MNGAEITEAKISAEELEAHSSDATAELVDPSVI 393
>At4g13740.1 68417.m02133 expressed protein
Length = 605
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 309 TLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIYNLADD 476
++ EMK + +N +R GE+ N ++ + R + +++ H K+ I LADD
Sbjct: 468 SVAEEMKRLGGSNK---KRKGERRNHEKSDSSKLLRKSPSKLQGHAKQEIPKLADD 520
>At1g20400.1 68414.m02544 myosin heavy chain-related
Length = 944
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 141 ADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSR-AKAVQKRKETLG 317
A K +KRK ++N +++ + R+K L + + D G R A++V++ + T
Sbjct: 505 ARKTPAKRKMKMNTEEVGSYSSRYKRQKTSALKESQEKDHLPSGEDRAARSVEEERRTAR 564
Query: 318 TE 323
+E
Sbjct: 565 SE 566
>At2g22560.1 68415.m02674 kinase interacting protein-related similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]; weak similarity to Myosin II heavy chain,
non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
Length = 891
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 309 TLGTEMKLMNKTNTFIDRRIGEKN----NQLSAEDKMIARFAAERVKQHNKKSIYNLADD 476
T E+KL+ + + + + +G+ N NQLS +D I AAE + + L D
Sbjct: 611 TKDDEIKLLREKMSLLQKGLGDSNDLMENQLSNDDYSIGFMAAENQNMSLVEEQFRLNID 670
Query: 477 EIL 485
E+L
Sbjct: 671 ELL 673
>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 790
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 99 IKMAKVKNKRNSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLG-KKSKHDKGLPGV 275
+ A+ K K++ LA+ SK + E+N +I+ N+E ++ + +K + K G
Sbjct: 698 VTAAEDKKKKDMELAESDKSKEEKEVNTARIDLNSDPYNKEDVEAVAVEKEESRKRAIGQ 757
Query: 276 SRAKAVQKRKETLG-TEMK 329
Q + LG TE++
Sbjct: 758 CSGVVAQDASDVLGVTELE 776
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/110 (20%), Positives = 53/110 (48%)
Frame = +3
Query: 117 KNKRNSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQ 296
K K+ L +K+ K +K+K+ E+ + K+KV+ + + D+G+ + K ++
Sbjct: 391 KRKKEETL-NKILQLEKELDSKQKLQ-MEIQELKGKLKVMKHEDEDDEGIK--KKMKKMK 446
Query: 297 KRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHN 446
+ E +E++ + TN+ + + + N+++ K + E V N
Sbjct: 447 EELEEKCSELQDLEDTNSALMVKERKSNDEIVEARKFLITELRELVSDRN 496
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.7 bits (61), Expect = 3.5
Identities = 31/101 (30%), Positives = 48/101 (47%)
Frame = +3
Query: 102 KMAKVKNKRNSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSR 281
K K K K SG +K K+K + KK+ E N +K KV GKK K +K G
Sbjct: 175 KKNKKKEKDESGTEEK---KKKPKKEKKQKE--ESKSNEDK-KVKGKKEKGEK---GDLE 225
Query: 282 AKAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDK 404
+ +K+KE T+ ++ K + ++ EK+ + E K
Sbjct: 226 KEDEEKKKEHDETDQEMKEKDSKKNKKK--EKDESCAEEKK 264
>At1g80810.1 68414.m09481 expressed protein similar to
androgen-induced prostate proliferative shutoff
associated protein (GI:4559410) [Homo sapiens]; similar
to bimD (GI:168025) [Emericella nidulans]
Length = 826
Score = 28.3 bits (60), Expect = 4.7
Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Frame = +3
Query: 99 IKMAKVKNKRNSGLADKVHSKRKAEINKKKINPF-EVHVNREKIKVLGKKSKHDKGLPGV 275
+K ++VK + +D + S R KK + F + N+E + +G SK + G+
Sbjct: 408 LKRSRVKMDESDYDSDSLSSPRL----KKLASCFRDEEPNQEDDRKIGNSSKQTRSKNGL 463
Query: 276 SRAKAVQKRKETLGTEMKLMNKTNTFID-RRIGEKNNQLSAEDKMIARFAAERVKQHNKK 452
+++ K+K + E K++N + + R + ++ N A + +++R K ++
Sbjct: 464 EKSQKTAKKKPVV--EAKIVNSSGKRLSARSVAKRRNLERAPLDTLVPQSSKRKKMVSQV 521
Query: 453 SIYNLADD 476
+ LA++
Sbjct: 522 AARQLANE 529
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +3
Query: 495 GXTLEQIEKFDDPRSXXXXXXGXAYGGLXYDFVAEGHFGGGMLSXTDSKD 644
G + + FD R G +GG F G GGG LS D D
Sbjct: 175 GKEKKPLPSFDQGRQGRYSGDGGGFGGGGSGFGGGGGGGGGGLSRADDVD 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,708,967
Number of Sequences: 28952
Number of extensions: 204150
Number of successful extensions: 605
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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