Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_J12
(653 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17; Eukaryo... 170 2e-41
UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86; Eukaryo... 138 8e-32
UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55; Eukaryo... 121 2e-26
UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1; Dictyost... 116 7e-25
UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonch... 114 2e-24
UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6; Eukary... 102 7e-21
UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lambl... 100 3e-20
UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2; E... 98 1e-19
UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1; ... 97 4e-19
UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillard... 96 6e-19
UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40; Eukar... 95 1e-18
UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S riboso... 89 1e-16
UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3; Archaea... 85 1e-15
UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14; Euryar... 85 2e-15
UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, wh... 79 1e-13
UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S riboso... 73 8e-12
UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1; Encephal... 72 1e-11
UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4; Euryarc... 71 2e-11
UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2; Tr... 68 2e-10
UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2; Thermoprotei... 68 2e-10
UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2; Methano... 68 2e-10
UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella... 62 9e-09
UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8; Thermop... 62 9e-09
UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1; Nanoarc... 61 3e-08
UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4; Methano... 60 3e-08
UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5; Halobac... 60 5e-08
UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S riboso... 58 1e-07
UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2; environ... 58 2e-07
UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5; Thermop... 57 3e-07
UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1; Thermop... 57 4e-07
UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1; Cenarch... 55 2e-06
UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellula... 53 7e-06
UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3; Thermop... 51 3e-05
UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus N... 50 4e-05
UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A, S... 49 1e-04
UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=... 40 0.039
UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 38 0.16
UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132, w... 37 0.37
UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular... 37 0.37
UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3; Planctom... 36 0.64
UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6; Proteoba... 36 0.64
UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3; Thermoto... 35 2.0
UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73; Proteob... 35 2.0
UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16; Firmicu... 34 2.6
UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108; Proteo... 34 3.4
UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34; Bacteri... 33 4.5
UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 33 6.0
UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1; Streptoc... 33 7.9
UniRef50_Q55D76 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6; Bacteria... 33 7.9
UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40; Bacteri... 33 7.9
>UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17;
Eukaryota|Rep: 60S ribosomal protein L9 - Drosophila
melanogaster (Fruit fly)
Length = 190
Score = 170 bits (414), Expect = 2e-41
Identities = 78/89 (87%), Positives = 84/89 (94%)
Frame = +3
Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
KVEKWFG+KKELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIR
Sbjct: 54 KVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIR 113
Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
NFLGEKYI RV+MAPGVTVVNS QKDEL
Sbjct: 114 NFLGEKYIRRVEMAPGVTVVNSTAQKDEL 142
Score = 58.0 bits (134), Expect = 2e-07
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRS 382
M+ I +NQ VKIP + VK+R+VT+ G RG LKR+FKHLA+D+ M + R+
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRT 52
>UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86;
Eukaryota|Rep: 60S ribosomal protein L9 - Homo sapiens
(Human)
Length = 192
Score = 138 bits (335), Expect = 8e-32
Identities = 62/89 (69%), Positives = 74/89 (83%)
Frame = +3
Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
+V+KW+G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V E S++EIR
Sbjct: 56 RVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIR 115
Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
NFLGEKYI RV+M PGV S QKDEL
Sbjct: 116 NFLGEKYIRRVRMRPGVACSVSQAQKDEL 144
Score = 54.4 bits (125), Expect = 2e-06
Identities = 22/51 (43%), Positives = 36/51 (70%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 379
MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++ +
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK 51
>UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55;
Eukaryota|Rep: 60S ribosomal protein L9 - Oryza sativa
subsp. japonica (Rice)
Length = 190
Score = 121 bits (291), Expect = 2e-26
Identities = 53/89 (59%), Positives = 69/89 (77%)
Frame = +3
Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
+V+ WFG+++ +AA+RT SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIR
Sbjct: 55 QVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIR 114
Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
NFLGEK + +V M GVT++ S K KDEL
Sbjct: 115 NFLGEKKVRKVDMLEGVTILRSEKVKDEL 143
Score = 60.5 bits (140), Expect = 3e-08
Identities = 25/48 (52%), Positives = 40/48 (83%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 370
MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL 48
>UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1;
Dictyostelium discoideum AX4|Rep: 60S ribosomal protein
L9 - Dictyostelium discoideum AX4
Length = 206
Score = 116 bits (278), Expect = 7e-25
Identities = 46/88 (52%), Positives = 67/88 (76%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
V+ WFG++K++A ++T+ S +ENMI GVTKG++YKMR VYAHFPIN T+G ++EIRN
Sbjct: 73 VDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRN 132
Query: 570 FLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
F GEK + R+++ G+T + K KDE+
Sbjct: 133 FFGEKIVRRIELLDGITCYRNEKAKDEI 160
Score = 41.1 bits (92), Expect = 0.023
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 272 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 379
+TV VK R V V GPRG L ++F H +VDI +V +
Sbjct: 34 VTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKK 69
>UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonchus
contortus|Rep: 60S ribosomal protein L9 - Haemonchus
contortus (Barber pole worm)
Length = 141
Score = 114 bits (275), Expect = 2e-24
Identities = 48/73 (65%), Positives = 60/73 (82%)
Frame = +3
Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
+V KWFG +KE+AA+RTVCSH++NMIKGVTKGF+YKMR+VYAHFPIN +G +EIR
Sbjct: 54 RVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIR 113
Query: 567 NFLGEKYIXRVKM 605
NFLGEK + V +
Sbjct: 114 NFLGEKIVRPVPL 126
Score = 54.4 bits (125), Expect = 2e-06
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 370
MK + +N V PDG+T VK+R+V V GPRG LKR+F+HL +++ V
Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEMERV 48
>UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Schizosaccharomyces pombe (Fission yeast)
Length = 190
Score = 102 bits (245), Expect = 7e-21
Identities = 48/85 (56%), Positives = 60/85 (70%)
Frame = +3
Query: 399 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 578
W GS+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLG
Sbjct: 58 WHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117
Query: 579 EKYIXRVKMAPGVTVVNSPKQKDEL 653
E+ +K PGVTV S KDE+
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEI 142
Score = 48.8 bits (111), Expect = 1e-04
Identities = 19/45 (42%), Positives = 33/45 (73%)
Frame = +2
Query: 230 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 364
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMK 47
>UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_108_35846_36403 - Giardia lamblia
ATCC 50803
Length = 185
Score = 100 bits (239), Expect = 3e-20
Identities = 46/88 (52%), Positives = 55/88 (62%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
V WF K A RT+CSH+ENM KGVT GF+YKMR YAHFPI + N IEIRN
Sbjct: 53 VAVWFPRGKRNALPRTICSHIENMFKGVTYGFEYKMRLAYAHFPIAATVVDNNKAIEIRN 112
Query: 570 FLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
F+ + R++ PGVT+ S KDEL
Sbjct: 113 FMHQIKTRRIECLPGVTIAMSTNVKDEL 140
Score = 39.9 bits (89), Expect = 0.052
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 236 IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVN 373
+ ++ +K+P + + R+VTVKG +G L R+F H +DI N
Sbjct: 3 LCSSMTIKVPTDVECTINKRVVTVKGKKGTLVRDFSHAPLDITHAN 48
>UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L9 - Entamoeba histolytica HM-1:IMSS
Length = 197
Score = 98.3 bits (234), Expect = 1e-19
Identities = 39/78 (50%), Positives = 57/78 (73%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
++ W+G++++ A VRT+ SH++NMI GVTKG+QYKMR VYAHFP+ V + I+++N
Sbjct: 65 IDMWYGNRRDSAVVRTIASHIKNMITGVTKGYQYKMRVVYAHFPVTLVIADDGKSIQVQN 124
Query: 570 FLGEKYIXRVKMAPGVTV 623
FLGEK ++M GV V
Sbjct: 125 FLGEKRTRHIEMYDGVVV 142
Score = 39.1 bits (87), Expect = 0.091
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 248 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 361
+ V IP+G+ + + + + V GPRG L R F+H VDI
Sbjct: 9 EHVVIPEGVNIEINRKNIKVTGPRGSLTREFQHPKVDI 46
>UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 252
Score = 96.7 bits (230), Expect = 4e-19
Identities = 45/85 (52%), Positives = 54/85 (63%)
Frame = +3
Query: 399 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 578
W +K A +RT + V NMIKGVT GFQYKMRAVYAHFPIN + EIRNFLG
Sbjct: 120 WHAGRKHAACLRTAQACVANMIKGVTVGFQYKMRAVYAHFPINIIIAGDKKSAEIRNFLG 179
Query: 579 EKYIXRVKMAPGVTVVNSPKQKDEL 653
EK + + M GVT+ QKD++
Sbjct: 180 EKRVRNIAMLEGVTIQEDKAQKDQV 204
Score = 33.9 bits (74), Expect = 3.4
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRN 337
M QI + +P ++V V SR+ TVKGPRG L ++
Sbjct: 1 MLQIFKELDLAVPADVSVSVSSRVFTVKGPRGSLTKS 37
>UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillardia
theta|Rep: 60S ribosomal protein L9 - Guillardia theta
(Cryptomonas phi)
Length = 188
Score = 96.3 bits (229), Expect = 6e-19
Identities = 41/85 (48%), Positives = 58/85 (68%)
Frame = +3
Query: 399 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 578
W KK+LA + T+ SH+ NMI GV+ GF+Y ++ +YAHFPIN T+ S +EIRNFLG
Sbjct: 59 WMAGKKQLAKLNTIASHITNMIVGVSLGFEYILQPIYAHFPINLSITDDGSCLEIRNFLG 118
Query: 579 EKYIXRVKMAPGVTVVNSPKQKDEL 653
EK I ++ M GV + + +KDE+
Sbjct: 119 EKRIRKIYMGQGVKIKKNEAKKDEI 143
>UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 191
Score = 95.5 bits (227), Expect = 1e-18
Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Frame = +3
Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPI--NCVTTEGNSIIE 560
KV G +K +AA+RTV S V+NMI GVTKG++YKMR VYAHFPI N V +G IE
Sbjct: 54 KVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIE 113
Query: 561 IRNFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
+RNFLG+K I V + GVT+ S KDE+
Sbjct: 114 VRNFLGDKKIRNVPVRDGVTIEFSTNVKDEI 144
Score = 56.8 bits (131), Expect = 4e-07
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVN 373
MK I Q++++P+G+TV +KSR+V V GPRG L +N KH+ V VN
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVN 49
>UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S ribosomal
protein L9, partial; n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L9, partial - Macaca
mulatta
Length = 179
Score = 88.6 bits (210), Expect = 1e-16
Identities = 40/62 (64%), Positives = 45/62 (72%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
VE WFG K A +RTVCSH+ENMI GV + +QYK+R VYAHFPIN T S IEIRN
Sbjct: 118 VEMWFGLTKNKACIRTVCSHIENMITGVRQRYQYKLRFVYAHFPINSNITNDGSTIEIRN 177
Query: 570 FL 575
FL
Sbjct: 178 FL 179
Score = 40.7 bits (91), Expect = 0.030
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Frame = +2
Query: 227 MKQIVANQKVKIP-DGLTVHV--KSRLVTVKGPRGVLKRNFKHLAVDIRMV 370
MK I + ++IP DG TV V KSR + V G G L+R F+H+ VD+++V
Sbjct: 60 MKTIHSQIDIQIPEDGSTVKVTLKSRHIVVSGKYGKLERTFRHIPVDMKLV 110
>UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3;
Archaea|Rep: 50S ribosomal protein L6P - Pyrococcus
kodakaraensis (Thermococcus kodakaraensis)
Length = 184
Score = 85.4 bits (202), Expect = 1e-15
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
+ K F KK++A VRT +H+ NMIKGVT+GF+Y+++ VY+HFP+ V +G+ ++ I N
Sbjct: 55 IYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMT-VKVQGDEVV-IEN 112
Query: 570 FLGEKYIXRVKMAPGVTV 623
FLGEK R K+ PGVTV
Sbjct: 113 FLGEKNPRRAKILPGVTV 130
Score = 38.3 bits (85), Expect = 0.16
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 248 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 361
++++IP+G+ V V+ V VKGP+G L+R K+ V I
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQI 46
>UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Pyrococcus furiosus
Length = 184
Score = 84.6 bits (200), Expect = 2e-15
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
+ K F +K++A RT +H+ NMIKGVT+GF YK++ VY+HFPI+ V +G+ +I I N
Sbjct: 55 IYKDFPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPIS-VKVQGDEVI-IEN 112
Query: 570 FLGEKYIXRVKMAPGVTV 623
FLGEK + K+ PGVTV
Sbjct: 113 FLGEKAPRKAKILPGVTV 130
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 248 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNF 340
++V+IP+G+ V V+ V VKGP+G L+R F
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREF 39
>UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=6; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_51, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 196
Score = 78.6 bits (185), Expect = 1e-13
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
V W +K+ V +V S + NMI+GVT G+++KM YAHFPI +EI+N
Sbjct: 64 VRMWQSYRKQRCQVNSVASQIRNMIRGVTTGYKFKMVLAYAHFPIIINLIGNGQGVEIKN 123
Query: 570 FLGEKYIXRVKMAPGVTVV-NSPKQKDEL 653
FLGEK I +K PGVT+ N ++K+ L
Sbjct: 124 FLGEKIIRTIKCLPGVTITRNEAEEKNVL 152
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM 367
MK I+ + V IP+ + + KS++V VKGPRG L +NF+H A+DI++
Sbjct: 1 MKYILTEEHVPIPEKIEITQKSKVVKVKGPRGELTKNFRHSALDIQV 47
>UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=3; Euarchontoglires|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 145
Score = 72.5 bits (170), Expect = 8e-12
Identities = 30/40 (75%), Positives = 37/40 (92%)
Frame = +3
Query: 414 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCV 533
KELA VRT+CSHV+NMIKGV+ GF+YK+R+VYAHFP+N V
Sbjct: 30 KELATVRTICSHVQNMIKGVSLGFRYKVRSVYAHFPLNVV 69
>UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L9 -
Encephalitozoon cuniculi
Length = 204
Score = 72.1 bits (169), Expect = 1e-11
Identities = 37/89 (41%), Positives = 51/89 (57%)
Frame = +3
Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
++ W G +K +A TV S + N IK VT GF Y M+AVY HF IN E I+ ++
Sbjct: 73 RIRLWNGKRKAMALAITVESLLRNAIKAVTVGFAYTMKAVYNHFSINMEIKEDGKILLVK 132
Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
NFLGEK + R +M G V ++KD +
Sbjct: 133 NFLGEKNVKRFRMR-GAARVRLDERKDTI 160
>UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Archaeoglobus fulgidus
Length = 196
Score = 70.9 bits (166), Expect = 2e-11
Identities = 34/65 (52%), Positives = 44/65 (67%)
Frame = +3
Query: 411 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 590
KK A V T H+EN+I GV +GF+Y ++ VYAHFPI V EGN +I I NF+GEK+
Sbjct: 80 KKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIK-VRVEGNEVI-IENFIGEKHP 137
Query: 591 XRVKM 605
R K+
Sbjct: 138 RRAKI 142
>UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 197
Score = 68.1 bits (159), Expect = 2e-10
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +3
Query: 399 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 578
WFG++K LA + T+ V+NMI GVT G++YKM VY+HFPI +E + F+G
Sbjct: 66 WFGNRKLLARIGTLFGIVKNMITGVTLGWRYKMHFVYSHFPIKHTCSEDGRTFDFNGFMG 125
Query: 579 EKYIXRVKMAPGVTV-VNSPKQKDEL 653
K V GV + N KDE+
Sbjct: 126 HKEHKIVTAPEGVRIWSNESVAKDEI 151
>UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2;
Thermoprotei|Rep: Ribosomal protein L6 - Thermofilum
pendens (strain Hrk 5)
Length = 191
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/78 (46%), Positives = 51/78 (65%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
VE + +KK+ A V T+ S + NMI GVTKG++YK++ VYAHFP++ + E + II I N
Sbjct: 55 VETFHATKKDYALVGTIASIINNMIIGVTKGYRYKLKIVYAHFPMS-LKVEKDKII-IEN 112
Query: 570 FLGEKYIXRVKMAPGVTV 623
FLGE+ + PG V
Sbjct: 113 FLGERGKRIAGIMPGAKV 130
Score = 38.7 bits (86), Expect = 0.12
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH 346
M+ + + V IP+G+ VHV + V V+GP G ++++F H
Sbjct: 1 MRVLQKTESVPIPEGVKVHVNGKRVEVEGPLGKVEKDFSH 40
>UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2;
Methanomicrobiales|Rep: 50S ribosomal protein L6P -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 174
Score = 67.7 bits (158), Expect = 2e-10
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +3
Query: 411 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 590
K+ LA T+ +H +NMI+GV G++Y+M+ VY+HFPI + +GN +EI NFLGEK
Sbjct: 58 KRILAMTGTLEAHAKNMIRGVADGYEYRMKVVYSHFPIQ-LKQQGNR-LEITNFLGEKQP 115
Query: 591 XRVKMAPGVTV 623
K+ GVTV
Sbjct: 116 RIAKIIEGVTV 126
Score = 32.7 bits (71), Expect = 7.9
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 248 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 361
++V+IP G+ V + ++TV GP+G L R+ + +D+
Sbjct: 5 RQVEIPPGVDVTLDGGVLTVSGPKGTLVRDMRFPQIDL 42
>UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella
natans|Rep: Ribosomal protein L9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 190
Score = 62.5 bits (145), Expect = 9e-09
Identities = 32/88 (36%), Positives = 48/88 (54%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
V ++ +K A VRT+ S + NMI GV+KGF Y ++ VY+HFPI+ + + +EI N
Sbjct: 57 VRCYYNNKSSSAIVRTITSIIYNMIIGVSKGFTYLLKIVYSHFPISVKYIQNENTLEITN 116
Query: 570 FLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
G K I + V V + K E+
Sbjct: 117 LFGLKRIDSFFIPSSVQVCTNNLNKKEI 144
>UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8;
Thermoprotei|Rep: 50S ribosomal protein L6P - Sulfolobus
acidocaldarius
Length = 189
Score = 62.5 bits (145), Expect = 9e-09
Identities = 27/78 (34%), Positives = 49/78 (62%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
+E F +++ A + ++ +H++NMI G G++Y ++ + HFPI+ V G+ +++ N
Sbjct: 58 LETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPIS-VKVSGDE-VQVSN 115
Query: 570 FLGEKYIXRVKMAPGVTV 623
+GEK I R K+ PGV V
Sbjct: 116 LIGEKNIRRAKILPGVKV 133
>UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L6P -
Nanoarchaeum equitans
Length = 192
Score = 60.9 bits (141), Expect = 3e-08
Identities = 27/65 (41%), Positives = 43/65 (66%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
+E +F +++E + T SH++NM++GV F Y+++ Y HFP+ V EGN +I + N
Sbjct: 54 LETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMR-VKLEGNKLI-VEN 111
Query: 570 FLGEK 584
FLGEK
Sbjct: 112 FLGEK 116
>UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4;
Methanomicrobia|Rep: 50S ribosomal protein L6P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 176
Score = 60.5 bits (140), Expect = 3e-08
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = +3
Query: 411 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 584
K++ A V T SH++N+I GV++GF+ KM VYAHFP+ V EG +++ I NFLGEK
Sbjct: 60 KEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQ-VKVEGKTLV-IGNFLGEK 115
Score = 33.9 bits (74), Expect = 3.4
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +2
Query: 254 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM 367
++IP+G++V + + T KGP+G ++R F + + I +
Sbjct: 9 IEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEV 46
>UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5;
Halobacteriaceae|Rep: 50S ribosomal protein L6P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 178
Score = 60.1 bits (139), Expect = 5e-08
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +3
Query: 414 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 584
K ++ + T SH+ENM GVT+G++Y M Y+HFP+ V EG+ ++ I NFLGEK
Sbjct: 58 KTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQ-VNVEGDEVV-IENFLGEK 112
>UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 92
Score = 58.4 bits (135), Expect = 1e-07
Identities = 28/70 (40%), Positives = 43/70 (61%)
Frame = +3
Query: 444 SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIXRVKMAPGVTV 623
+H+++ + GF Y+MR+VYA FP N + E S+IE + +G+KYI RV++ V
Sbjct: 21 NHLQSCSEHDQGGFHYRMRSVYAGFPTNVIIQENGSVIEHWSAMGKKYIHRVQIRTSVAF 80
Query: 624 VNSPKQKDEL 653
S QK+EL
Sbjct: 81 YASQAQKNEL 90
>UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2;
environmental samples|Rep: 50S ribosomal protein L6P -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 188
Score = 57.6 bits (133), Expect = 2e-07
Identities = 29/67 (43%), Positives = 41/67 (61%)
Frame = +3
Query: 411 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 590
KKE A T +H+ NM +GV GF+YK++AVY+HFP+ + GN + + N GEK +
Sbjct: 62 KKEKALAGTWAAHLTNMARGVDSGFEYKLKAVYSHFPMT-IRVNGNQ-MTVTNLFGEK-V 118
Query: 591 XRVKMAP 611
RV P
Sbjct: 119 PRVAALP 125
>UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L6P -
Pyrobaculum aerophilum
Length = 196
Score = 57.2 bits (132), Expect = 3e-07
Identities = 29/78 (37%), Positives = 47/78 (60%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 569
+E + K+E A + T ++NM GVT+G++YK++ +Y HFP+ V +GN ++ I N
Sbjct: 59 MEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPM-LVKVQGNQLV-IEN 116
Query: 570 FLGEKYIXRVKMAPGVTV 623
FLG K + + GV V
Sbjct: 117 FLGRKSKITLNIPKGVKV 134
>UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1;
Thermoplasma volcanium|Rep: 50S ribosomal protein L6P -
Thermoplasma volcanium
Length = 178
Score = 56.8 bits (131), Expect = 4e-07
Identities = 26/66 (39%), Positives = 43/66 (65%)
Frame = +3
Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
K+ K + +E V T S + NM+KG+ +GFQY+M+ Y+HFP+ V+ +G +++ I
Sbjct: 53 KIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMR-VSVKGKTVV-IE 110
Query: 567 NFLGEK 584
NF GE+
Sbjct: 111 NFFGER 116
>UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein L6P/L9E -
Cenarchaeum symbiosum
Length = 165
Score = 54.8 bits (126), Expect = 2e-06
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +3
Query: 411 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 590
K++LA + T S V N+ +GV G+ K++ VYAHFPI + +G ++I + NF GE+
Sbjct: 46 KRDLAILNTARSIVRNLCEGVGVGYTIKLKVVYAHFPIT-IKQDG-AMILVENFQGERSA 103
Query: 591 XRVKMAPGVTVVN 629
+ K+ G VV+
Sbjct: 104 RKAKIVGGTKVVS 116
>UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellular
organisms|Rep: 50S ribosomal protein L6P - Methanopyrus
kandleri
Length = 204
Score = 52.8 bits (121), Expect = 7e-06
Identities = 21/58 (36%), Positives = 38/58 (65%)
Frame = +3
Query: 408 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGE 581
++++ A + + +++ENM KGVT+G +YK++ VY+HFP + + I NF+GE
Sbjct: 78 NRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGE 135
>UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3;
Thermoplasmatales|Rep: 50S ribosomal protein L6P -
Picrophilus torridus
Length = 180
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = +3
Query: 429 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIXRVKMA 608
V T S + +I+GVTKGF+Y M+ + HFP+ V+ G+ +I + NFLGEK K+
Sbjct: 67 VGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMR-VSVRGDKLI-VENFLGEKSPRSAKIV 124
Query: 609 PGVTV 623
G V
Sbjct: 125 DGCKV 129
>UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L6
- Candidatus Nitrosopumilus maritimus SCM1
Length = 185
Score = 50.4 bits (115), Expect = 4e-05
Identities = 29/81 (35%), Positives = 45/81 (55%)
Frame = +3
Query: 411 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 590
K++ A + T S + N+ +G+ +G+ KM+ V+AHFPI V EG I+ I NF GE+
Sbjct: 64 KRDYAILHTARSIIRNICEGLVEGYTIKMKVVFAHFPIT-VKVEGKKIL-IENFQGERAP 121
Query: 591 XRVKMAPGVTVVNSPKQKDEL 653
+ V+ PK +D L
Sbjct: 122 RSTHIMGNTKVI--PKGEDVL 140
Score = 33.5 bits (73), Expect = 4.5
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 251 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVN 373
+V+IP+G+TV ++ +GP G +NF+++ V I + +
Sbjct: 12 QVEIPEGVTVTQNKNMLLFEGPLGKTHKNFRNIPVKIEIAD 52
>UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A,
Solution Structure Of The N-Terminal Domain Of Human
Ribosomal Protein L9; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to Chain A, Solution Structure Of The
N-Terminal Domain Of Human Ribosomal Protein L9 -
Ornithorhynchus anatinus
Length = 143
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/51 (41%), Positives = 34/51 (66%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 379
MK I++NQ V IP + + +K R V VKGP+G L R+F H+ V++ ++ +
Sbjct: 1 MKTILSNQTVDIPANIGIILKGRTVIVKGPQGSLHRDFNHINVELSLLGKK 51
Score = 46.0 bits (104), Expect = 8e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +3
Query: 390 VEKWFGSKKELAAVRTVCSHVENMIKGVTKG 482
V+KW+G++KELA V T+CS V+N IK VT G
Sbjct: 57 VDKWWGNRKELATVHTICSPVQNTIKWVTLG 87
>UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L9e - Antonospora locustae (Nosema locustae)
Length = 160
Score = 40.3 bits (90), Expect = 0.039
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +2
Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAV 355
MK+++ +KV+IP+G +V + R++TV+G R R+ H +
Sbjct: 1 MKRLLCEEKVEIPEGCSVEILERVMTVRGKRATAVRDLSHFVL 43
>UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Dehalococcoides
sp. (strain CBDB1)
Length = 182
Score = 38.3 bits (85), Expect = 0.16
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFK 343
+ +K+P G+ V + VTVKGP+G L R+F+
Sbjct: 4 IGKMPIKVPPGIKVDINGNDVTVKGPKGTLSRSFR 38
>UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_132,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 167
Score = 37.1 bits (82), Expect = 0.37
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +2
Query: 293 RLVTVKGPRGVLKRNFKHLAVDIRM 367
+L+ + GPRG+L RNFKH ++DI++
Sbjct: 53 KLIMIIGPRGILNRNFKHASLDIQV 77
>UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular
organisms|Rep: 50S ribosomal protein L6 - Thermotoga
maritima
Length = 184
Score = 37.1 bits (82), Expect = 0.37
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNF 340
+A + + +P G+TV +K +V VKGP+G L + F
Sbjct: 4 LAKKPIVLPQGVTVEIKDNVVKVKGPKGELSQEF 37
>UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3;
Planctomycetaceae|Rep: 50S ribosomal protein L6 -
Rhodopirellula baltica
Length = 181
Score = 36.3 bits (80), Expect = 0.64
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH 346
+ N+ V IP G+TV + R + V+GP+G K +FKH
Sbjct: 4 IGNKPVAIPSGVTVSIADRNIDVEGPKG--KLSFKH 37
>UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 179
Score = 36.3 bits (80), Expect = 0.64
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 370
VA VK+P G+ V + +L++VKGP+G L+ H +V++ +V
Sbjct: 4 VAKNPVKLPSGVEVKLVGQLLSVKGPKGTLEL-IIHSSVEVEIV 46
>UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3;
Thermotogaceae|Rep: 50S ribosomal protein L6 - Petrotoga
mobilis SJ95
Length = 186
Score = 34.7 bits (76), Expect = 2.0
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 390 VEKWFGSKKELAAVR-TVCSHVENMIKGVTKGFQYKM 497
V K +K L A+R T SHV NMIKGVT+G++ ++
Sbjct: 60 VVKRSSDEKRLKALRGTFTSHVRNMIKGVTEGYKKEL 96
>UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Mesorhizobium sp. (strain BNC1)
Length = 177
Score = 34.7 bits (76), Expect = 2.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLK 331
+ + V +P G+T +V ++VT KGP+G LK
Sbjct: 4 IGKKPVPVPQGVTANVDGQVVTAKGPKGELK 34
>UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16;
Firmicutes|Rep: 50S ribosomal protein L6 - Onion yellows
phytoplasma
Length = 184
Score = 34.3 bits (75), Expect = 2.6
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSR-LVTVKGPRGVLKRNFKH 346
V N+ +++P+ + V +K R ++V+GP+G L+ F H
Sbjct: 4 VGNKAIEVPNAVKVDIKDRNFISVEGPKGKLEYQFNH 40
>UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108;
Proteobacteria|Rep: 50S ribosomal protein L6 - Coxiella
burnetii
Length = 178
Score = 33.9 bits (74), Expect = 3.4
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 361
VA +KIP G+ V+V + +TVKG G L R H AV +
Sbjct: 5 VAKNPIKIPTGVEVNVAGQQITVKGKLGTLTRVI-HRAVKV 44
>UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34;
Bacteria|Rep: 50S ribosomal protein L6 - Bacteroides
thetaiotaomicron
Length = 189
Score = 33.5 bits (73), Expect = 4.5
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 254 VKIPDGLTVHVKSRLVTVKGPRGVLKR 334
+ IP G+TV +K +VTVKGP+G L +
Sbjct: 9 ISIPAGVTVTLKDDVVTVKGPKGELSQ 35
>UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain WH7803)
Length = 179
Score = 33.1 bits (72), Expect = 6.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKR 334
+ + IPD ++V + VTVKGP+G LKR
Sbjct: 4 IGKSPIPIPDKVSVSLDGLAVTVKGPKGELKR 35
>UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1;
Streptococcus pneumoniae SP9-BS68|Rep: 50S ribosomal
protein L6 - Streptococcus pneumoniae SP9-BS68
Length = 139
Score = 32.7 bits (71), Expect = 7.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM 367
+ N+ + +P G+ + +VTVKGP+G L R F ++IR+
Sbjct: 4 IGNKVIVLPAGVELANNDNVVTVKGPKGELTREFSK-DIEIRV 45
>UniRef50_Q55D76 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1098
Score = 32.7 bits (71), Expect = 7.9
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 161 HFFSIYY*NISYNAFQVVKHNLKN 90
HF SI+ ++S N FQ+VKH LKN
Sbjct: 978 HFQSIFISSVSQNNFQIVKHILKN 1001
>UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain CC9311)
Length = 179
Score = 32.7 bits (71), Expect = 7.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKR 334
+ + IPD + V + VTVKGP+G LKR
Sbjct: 4 IGKNPIPIPDKVNVTLSGLAVTVKGPKGELKR 35
>UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40;
Bacteria|Rep: 50S ribosomal protein L6 - Oceanobacillus
iheyensis
Length = 178
Score = 32.7 bits (71), Expect = 7.9
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 239 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKR 334
V + V+IP+G+ + + + VTVKGP+G L R
Sbjct: 4 VGLKPVEIPEGVELKLDNNTVTVKGPKGELSR 35
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,715,019
Number of Sequences: 1657284
Number of extensions: 12075820
Number of successful extensions: 24863
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 24178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24855
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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