Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J12
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   102   4e-23
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   102   4e-23
SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.2  

>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  102 bits (245), Expect = 4e-23
 Identities = 48/85 (56%), Positives = 60/85 (70%)
 Frame = +3

Query: 399 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 578
           W GS+K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 579 EKYIXRVKMAPGVTVVNSPKQKDEL 653
           E+    +K  PGVTV  S   KDE+
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEI 142



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 19/45 (42%), Positives = 33/45 (73%)
 Frame = +2

Query: 230 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 364
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMK 47


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  102 bits (245), Expect = 4e-23
 Identities = 48/85 (56%), Positives = 59/85 (69%)
 Frame = +3

Query: 399 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 578
           W GS+K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 579 EKYIXRVKMAPGVTVVNSPKQKDEL 653
           E+    +K  PGVTV  S   KDE+
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEI 142



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 20/45 (44%), Positives = 36/45 (80%)
 Frame = +2

Query: 230 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 364
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELK 47


>SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 309 KGPAEFSKGTSNXXXXXXXXXXXXXXKVEKWFGSKKELAAVRT 437
           K P  F + T N              KV+K FGS   ++ V T
Sbjct: 46  KNPTPFGRSTKNSVYEYETVTPYSRFKVDKKFGSATSVSPVHT 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,870
Number of Sequences: 5004
Number of extensions: 53362
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)