Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J12
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    121   6e-28
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   121   6e-28
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858...    28   7.5  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.9  
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084...    27   9.9  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  121 bits (291), Expect = 6e-28
 Identities = 53/89 (59%), Positives = 69/89 (77%)
 Frame = +3

Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
           +V+ WFG+++ +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIR
Sbjct: 55  QVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIR 114

Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
           NFLGEK + +V M  GVT++ S K KDEL
Sbjct: 115 NFLGEKKVRKVDMLEGVTILRSEKVKDEL 143



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/48 (52%), Positives = 40/48 (83%)
 Frame = +2

Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 370
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL 48


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  121 bits (291), Expect = 6e-28
 Identities = 53/89 (59%), Positives = 69/89 (77%)
 Frame = +3

Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
           +V+ WFG+++ +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIR
Sbjct: 48  QVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIR 107

Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
           NFLGEK + +V M  GVT++ S K KDEL
Sbjct: 108 NFLGEKKVRKVDMLEGVTILRSEKVKDEL 136



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 22/39 (56%), Positives = 33/39 (84%)
 Frame = +2

Query: 254 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 370
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLL 39


>07_03_0446 -
           18285132-18285221,18285437-18285499,18285805-18285867,
           18286079-18286129,18286413-18286506,18286696-18286856,
           18287089-18287145,18287380-18287493,18287934-18287999,
           18288063-18288266,18289207-18289284,18289669-18289788,
           18290425-18290491,18290635-18290735,18290820-18290936,
           18292024-18292107,18292181-18292309,18292385-18292510,
           18292622-18292696,18292814-18292947,18293032-18293137,
           18293220-18293276,18294387-18294573,18295244-18295407,
           18296129-18296353,18296538-18296744,18297043-18297375,
           18297604-18297993
          Length = 1220

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -2

Query: 436 VLTAASSFLDPNHFSTFRRXRVYHANVNSQVFEVPFENSAGPFNCHQTRFH 284
           ++   SS ++  HF       +Y   +  + F+  F N   PFN H   F+
Sbjct: 688 IIETTSSSVEGCHFGKIAV--LYRRQITGKAFQASFRNRKIPFNIHGVAFY 736


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 323 VLKRNF-KHLAVDIRMVNPRSPE 388
           VLKR+F +  AVD+R +NP+ P+
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPK 27


>02_04_0415 +
           22706964-22707072,22707784-22708077,22708304-22708416,
           22708504-22709002,22709106-22709144,22709228-22709515,
           22709766-22709905,22710468-22710960,22711082-22711356
          Length = 749

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 50  INLASYIIKIRHNYFLNYV*RPEMRYN*YFSNKLRKSVK 166
           +++ SYI+ +   Y  +Y+  PE+ +    S ++ K  K
Sbjct: 182 LSMRSYILSVSKQYIADYISSPEVNFLTSLSGRVNKKTK 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,027
Number of Sequences: 37544
Number of extensions: 316354
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)