Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J12
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        112   2e-25
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   5.8  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   7.6  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  112 bits (270), Expect = 2e-25
 Identities = 46/75 (61%), Positives = 61/75 (81%)
 Frame = +3

Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
           +V+ WF S+KELA V+T+ +H+ENMIKGV  G++YKMRAVYAHFPIN    E  +++E+R
Sbjct: 610 RVDVWFASRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVR 669

Query: 567 NFLGEKYIXRVKMAP 611
           NFLGEKY+ RV+M P
Sbjct: 670 NFLGEKYVRRVRMRP 684



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/48 (58%), Positives = 37/48 (77%)
 Frame = +2

Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 370
           MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++  V
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKV 604


>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 177 NICEVMFHTCSCF*AQT*SKL*QIRKSKSQTGL 275
           N+  V FH C C  A   S L  ++K++S TGL
Sbjct: 645 NLFFVTFHLCHCVFASVISVLPAVQKAQSGTGL 677


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 241  SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 348
            S+ ++    R Y PC I SG++  APR    +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 284  VKSRLVTVKGPRGVLKRNFKHL 349
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,095
Number of Sequences: 59808
Number of extensions: 398823
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)