Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J12
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   129   2e-30
Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z83239-5|CAB05809.1|  160|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U53147-5|AAA96116.1|  153|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  129 bits (311), Expect = 2e-30
 Identities = 57/89 (64%), Positives = 69/89 (77%)
 Frame = +3

Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
           +V KWFG +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIR
Sbjct: 54  RVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIR 113

Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
           NFLGEK + RV +  GV    S  QKDE+
Sbjct: 114 NFLGEKIVRRVPLPEGVIATISTAQKDEI 142



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/48 (41%), Positives = 34/48 (70%)
 Frame = +2

Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 370
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERI 48


>Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical
           protein R10H10.3 protein.
          Length = 364

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 94  KIIVANFNYVGCEIYLDFFRNNTXSPTLF 8
           K+IV+N +++GC +  DF+ N T +  L+
Sbjct: 30  KVIVSNDDFIGCPVNNDFYYNGTINSPLY 58


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = -2

Query: 271 PVWDFDFLICYNLLHVWA*KQEQV*NITSQMFTKFFDTFSQFITKISVITHFRSLNII*K 92
           P   F+  ICY+++HV      Q  ++ S  +T F  TF ++     V+   +++ I+  
Sbjct: 78  PCRHFEAFICYSMMHVL-----QTSSLISG-WTVFLTTFMKYQAAKHVVLPKKNIWIVIC 131

Query: 91  IIVANFNY-VGCEIYL 47
           +I A  +  V CEIYL
Sbjct: 132 VIFAIISVSVACEIYL 147


>Z83239-5|CAB05809.1|  160|Caenorhabditis elegans Hypothetical
           protein T09F5.9 protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 414 FWIRTISQPSGXRGFTMRMSTAKCLKFL 331
           F I +IS PSG   FT+ +ST++C KF+
Sbjct: 16  FPIASISCPSG---FTLLVSTSRCAKFI 40


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 355 NSQVFEVPFENSAGPFNCHQTRFHMDR 275
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 355 NSQVFEVPFENSAGPFNCHQTRFHMDR 275
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>U53147-5|AAA96116.1|  153|Caenorhabditis elegans Hypothetical
           protein C01B7.5 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 382 RXRVYHANVNSQVFEVPFENSAGPFNC 302
           R ++    V  +  E+P EN A  FNC
Sbjct: 98  RRKIIQLKVRRRALEIPAENEASVFNC 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,693,650
Number of Sequences: 27780
Number of extensions: 304647
Number of successful extensions: 633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)