Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J12
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   115   2e-26
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   115   2e-26
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   114   6e-26
At2g25660.1 68415.m03075 expressed protein                             30   1.5  
At5g62630.1 68418.m07861 expressed protein                             27   8.2  
At5g40690.1 68418.m04939 expressed protein                             27   8.2  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  115 bits (277), Expect = 2e-26
 Identities = 51/89 (57%), Positives = 66/89 (74%)
 Frame = +3

Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
           K++ WFG++K  A++RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIR
Sbjct: 59  KIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIR 118

Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
           NFLGEK + +V+M  GVT+V S K KDE+
Sbjct: 119 NFLGEKKVRKVEMLDGVTIVRSEKVKDEI 147



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
 Frame = +2

Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRSPE-G*EMV 403
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++  + PE G + +
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLI--KDPETGKKKL 58

Query: 404 RIQK--GACRREDSLFTCREH 460
           +I    G  +   S+ T   H
Sbjct: 59  KIDSWFGTRKTSASIRTALSH 79


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  115 bits (277), Expect = 2e-26
 Identities = 51/89 (57%), Positives = 66/89 (74%)
 Frame = +3

Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
           K++ WFG++K  A++RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIR
Sbjct: 59  KIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIR 118

Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
           NFLGEK + +V+M  GVT+V S K KDE+
Sbjct: 119 NFLGEKKVRKVEMLDGVTIVRSEKVKDEI 147



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
 Frame = +2

Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRSPE-G*EMV 403
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++  + PE G + +
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLI--KDPETGKKKL 58

Query: 404 RIQK--GACRREDSLFTCREH 460
           +I    G  +   S+ T   H
Sbjct: 59  KIDSWFGTRKTSASIRTALSH 79


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  114 bits (274), Expect = 6e-26
 Identities = 51/89 (57%), Positives = 65/89 (73%)
 Frame = +3

Query: 387 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 566
           K++ WFGS+K  A++RT  SHV+N+I GVT+GF Y+MR VYAHFPIN      N  IEIR
Sbjct: 59  KIDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIR 118

Query: 567 NFLGEKYIXRVKMAPGVTVVNSPKQKDEL 653
           NFLGEK + +V+M  GV +V S K KDE+
Sbjct: 119 NFLGEKKVRKVEMLDGVKIVRSEKVKDEI 147



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 20/48 (41%), Positives = 37/48 (77%)
 Frame = +2

Query: 227 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 370
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLI 48


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 427 AASSFLDPNHFSTFRRXRVYHANVNSQVFEVPFENSAGPFNCH--QTRFHM 281
           A SSF D +   +FR  R++  N N    +VP E ++G F  H  +  FH+
Sbjct: 729 APSSFSDVSASLSFRGQRIFLHNANGWFGKVPLE-ASGDFGIHPDEGEFHL 778


>At5g62630.1 68418.m07861 expressed protein
          Length = 696

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 530 TVNGEVSIHSTHLVLEAFSYSFNHVLYM*TDCPHGGKLLFGSEPFLNLQEXEG 372
           T NG  S  ST  + +A        + +     HGG++LFG + +L L   +G
Sbjct: 337 TANGTSSSPSTAKIGKASEVRRIFTMGLPYSSSHGGQILFGPDGYLYLMTGDG 389


>At5g40690.1 68418.m04939 expressed protein
          Length = 210

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 447 VNRLSSRRQAPFWIRTISQPSGXRGFTMRMSTAKCL 340
           VN L+SR  A  + +  S+P+    FT +   A+CL
Sbjct: 30  VNPLTSRPTAGLFTKVTSKPTNHSKFTGKCGQARCL 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,598
Number of Sequences: 28952
Number of extensions: 268477
Number of successful extensions: 502
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)