Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J11
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   200   1e-52
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   1.5  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   4.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   6.0  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    25   7.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.9  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  200 bits (488), Expect = 1e-52
 Identities = 91/136 (66%), Positives = 112/136 (82%)
 Frame = +1

Query: 22  PLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 201
           P P FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A +F +   
Sbjct: 8   PAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNA 67

Query: 202 EVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLF 381
           +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF
Sbjct: 68  QVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLF 127

Query: 382 IIDDKQNLRQITINDL 429
           +ID K  LRQITINDL
Sbjct: 128 LIDPKGVLRQITINDL 143



 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 30/48 (62%), Positives = 36/48 (75%)
 Frame = +2

Query: 431 PWGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAXEYF 574
           P GRSV+E LRL+ AFQF ++HGEVCPANW  G+ TI  DTK   +YF
Sbjct: 144 PVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI--DTKNPEKYF 189


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 264 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRP 428
           +A R+  H H +   +   H  R  S   G  HS   +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 19  NPLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 153
           +P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 270 SPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 534 LAPGLQLAGHTSPCLSVNW 478
           L P  +L  HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 107  TTYFPL*SDREMSLNSPLTTAVALXLGSGFGHLQ 6
            T  F +  D++M +N  L TAV    GSG G  Q
Sbjct: 1444 TGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQ 1477


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 516 LAGHTSPCLSVNWKACTSRRVSSTDLPHGQVV 421
           +  H + C  VN+K  +S  +++   P G VV
Sbjct: 242 VCSHRAKCAFVNFKTRSSAEIAAAASPDGNVV 273


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 271 GGLGPMNIPLISDKS 315
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,114
Number of Sequences: 5004
Number of extensions: 31249
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)