Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J11
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   204   5e-53
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   9e-29
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)              86   2e-17
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   8e-15
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           28   6.3  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  204 bits (497), Expect = 5e-53
 Identities = 93/137 (67%), Positives = 111/137 (81%), Gaps = 1/137 (0%)
 Frame = +1

Query: 22  PLPXFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 198
           P P F  TAV  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++ DEF+ I 
Sbjct: 56  PAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVDEFKAIN 115

Query: 199 CEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 378
           CEV+  S DS ++HLAW N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGL
Sbjct: 116 CEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGL 175

Query: 379 FIIDDKQNLRQITINDL 429
           FIIDDK  LRQITINDL
Sbjct: 176 FIIDDKGILRQITINDL 192



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 431 PWGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 538
           P GRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 193 PVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 228


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  123 bits (297), Expect = 9e-29
 Identities = 53/76 (69%), Positives = 64/76 (84%)
 Frame = +1

Query: 22  PLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 201
           P P ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR I  
Sbjct: 59  PAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRAINT 118

Query: 202 EVLGASTDSHFTHLAW 249
           EV+G S DS FTHLAW
Sbjct: 119 EVVGCSVDSVFTHLAW 134



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +2

Query: 431 PWGRSVEETLRLVQAFQFTDKH 496
           P GRSV+ETLRLVQAFQ+TDKH
Sbjct: 154 PVGRSVDETLRLVQAFQYTDKH 175



 Score = 34.7 bits (76), Expect = 0.055
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +1

Query: 373 GLFIIDDKQNLRQITINDL 429
           GLFIIDDK  LRQIT+NDL
Sbjct: 135 GLFIIDDKGVLRQITMNDL 153


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/59 (66%), Positives = 49/59 (83%)
 Frame = +1

Query: 253 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDL 429
           N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQITINDL
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDL 61



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 431 PWGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 538
           P GRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 62  PVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +2

Query: 437 GRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAXEYF 574
           GRSV+ETLRLVQAFQ+TDKHGEVCPA W+PG  TI PD     +YF
Sbjct: 2   GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 261 AQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTL 380
           + AG     +    +R+ A H PR+   G G+ HS+P  +
Sbjct: 18  SSAGEESLADSGEGRRENARHKPRVMIGGEGEKHSVPAVI 57


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 252 QHAAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQA 410
           QH+     T P + SS  +Q  PH P  R   R        T H+   + PQ+
Sbjct: 784 QHSESVSETSP-QLSSTAQQTPPHSPATRHNARTSSPQSLATRHNAWTSSPQS 835


>SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 264 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHR 389
           Q GR RP++H      V  H PR R   R    S P +   R
Sbjct: 147 QTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDR 188


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 307 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TIND 426
           D    ++  Y V+D+ET I   GL  I +K+N +++  T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 267 AGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPR 374
           +G+  P   SSD R     L  LRS   G  +SLPR
Sbjct: 399 SGKEGPMSDSSDLRAALKELAYLRSIQTGGEYSLPR 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,490
Number of Sequences: 59808
Number of extensions: 269722
Number of successful extensions: 1274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)