Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J11
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.94 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   3.8  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   3.8  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 330 RLRSAGRGDGHSLP-RTLHHRRQAEPQADHDQRP 428
           RL  +  GD    P + LHH +   PQA    +P
Sbjct: 797 RLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQP 830


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 358 PSPRPALRSRGRCGATCRLSEECSW 284
           P P P+   RGRC +  ++S    W
Sbjct: 45  PKPIPSYACRGRCSSYLQVSGSKIW 69


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 166 SEKADEFRKIGCEVLGASTDSHFTHL 243
           +E+ +E+R + CE +  S +S  TH+
Sbjct: 30  AERQEEYRCVICERVYCSRNSLMTHI 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 43   TAVVNGEFKDISLSDY 90
            T +++  FKD+ LSD+
Sbjct: 1401 TPIMDAHFKDVKLSDF 1416


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 103 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 210
           V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 103 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 210
           V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 145 PTEIIAFSEKADEFRKIGCEVL 210
           P E     E+AD  R++ C++L
Sbjct: 3   PLEHFENEERADRHRRVTCDLL 24


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 428 CPWGRSVEETLRLVQAFQ 481
           C WGR++    R V A Q
Sbjct: 549 CSWGRAINVANRYVYASQ 566


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 15/61 (24%), Positives = 23/61 (37%)
 Frame = -1

Query: 522 LQLAGHTSPCLSVNWKACTSRRVSSTDLPHGQVVDRDLPEVLLVVDDEESSEGNARLLVQ 343
           L+L G      SV  +    R   +  +PH  V D +      +  D  S+    R + Q
Sbjct: 400 LELKGSPDGFESVTSQYKNIREDDARHIPHASVTDSENTVPRYLSPDVISALKGVRFIAQ 459

Query: 342 H 340
           H
Sbjct: 460 H 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,642
Number of Sequences: 438
Number of extensions: 2215
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)