Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J04
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   1.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   3.1  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.1  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    26   4.1  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    26   5.4  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    25   9.4  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   9.4  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 516 CRRFANIPRHNYVYLASILYI 578
           C +FA +PR NY  L S L++
Sbjct: 860 CDQFATVPRENYANLVSQLHV 880


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = +3

Query: 342 FEGNTLKQVQKAPXRS*SHLRQGIRP*GDESCDDS*GRDLHQSLQGPVKGLYSEVGSRCR 521
           +EG+TL    K+  R   H R+  R     S + S   + +  ++       SE+ ++ R
Sbjct: 4   YEGDTLNNHGKSSTRQ--HWRK--RSAVSSSLEFSSYEESNSPIENTEVLKVSEIEAKKR 59

Query: 522 RFANIPRHNYVYLASILYIXPF*LFCKTNFSFHI-SHRLPFEL 647
           R     +H Y+YLA  L+     L C   F F++ ++R  F L
Sbjct: 60  RRK---KHRYIYLAVCLFFLASVLSCAIIFRFYLHTNRENFSL 99


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 480 PVKGLYSEVGSRCRRFANIP 539
           P+ GL+  VGSR R+ + IP
Sbjct: 114 PLSGLHQNVGSRTRKSSGIP 133


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 461 APESTRSSKRTLLRGRESVPPIREHPAAQ 547
           AP++T SS   L + ++S+P   EH  A+
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQRAR 156


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 334 YAHSKAIPSSKSRR-PPXGLEVTYVREFGPEEMKAVMTAKD 453
           Y+ +K I   K  + PP  L  T VR +GP  ++ +   KD
Sbjct: 144 YSITKTISEYKMVKIPPLDLTTTGVRRYGPLTVEVIDPVKD 184


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 78  INFIDLRERFLMRLFLAPAKT 16
           ++FID RER +M  F  P +T
Sbjct: 135 LSFIDARERRIMETFQQPCET 155


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 108 YKMTSSENFDEFMKTIGVGLITR 176
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,072
Number of Sequences: 5004
Number of extensions: 47091
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)