Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J04
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    29   3.2  
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969...    29   4.2  
09_03_0081 + 12163213-12164088                                         29   4.2  
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     29   4.2  
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316...    28   5.6  
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149...    27   9.7  
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242           27   9.7  

>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +3

Query: 78  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTF 257
           S+K   V +K K+   +N         + L   +    +  T +L+K+ DEY + ++S  
Sbjct: 444 SLKATVVAEKEKILQEQN--------NLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLS 495

Query: 258 KTTEMKFKPGEEFEED 305
           + TE   K  ++FEE+
Sbjct: 496 EETEDLRKQRQKFEEE 511


>11_03_0084 +
           9696368-9696554,9696648-9696718,9696821-9696901,
           9697139-9697206,9697335-9697437,9700422-9700567,
           9700686-9700803,9701693-9701797,9702333-9702434,
           9702518-9702655,9703475-9703603,9703682-9703762,
           9703883-9703957,9704861-9705028,9705125-9705242,
           9705345-9705409,9705547-9705637,9705801-9705885,
           9706006-9706084,9706317-9706414,9707029-9707137,
           9707224-9707292,9707770-9707835,9707952-9708041,
           9708416-9708526
          Length = 850

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 415 GPEEMKAVMTAKDVTCTRVYKVQ*KDSTPRSGVGAADSRTS 537
           G + ++  M AKD T  +V +V  KD    S VG ADS+ +
Sbjct: 159 GMDVVEMAMWAKDNTTVKVTQVSTKDGPIESLVGEADSQVA 199


>09_03_0081 + 12163213-12164088
          Length = 291

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 326 EIRMHIRRQYPQASPEGPRT-VLKSLTSGNSA 418
           + R+H++RQ  QA P GPR   +K+ +S  SA
Sbjct: 66  QARLHLQRQAAQAGPLGPRAQPMKASSSSASA 97


>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 461 APESTRSSKRTLLRGRESVPPIREHPAAQLCXFSIYSIH 577
           AP +TR  +    + +E+  P RE PA + C     S+H
Sbjct: 77  APRATRKGRPASDKKKEAGTPARERPAGKWCSVHNTSLH 115


>02_01_0436 -
           3166764-3166949,3167115-3167258,3167343-3167469,
           3167746-3167825,3167933-3168184,3168271-3168399,
           3169039-3169088,3169221-3169323,3169429-3169548,
           3169725-3169786,3169873-3169915,3169995-3170183,
           3170299-3170367,3170460-3170539,3170648-3170723
          Length = 569

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 477 LVDSGASHVLSCHHSFHLLRAEFPDVSDFKTVRG 376
           L+D+           +HL   +FPDV  FK V G
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLG 531


>11_01_0189 -
           1493618-1493637,1493728-1493795,1494070-1494207,
           1494647-1494698,1494803-1494902,1495606-1495681,
           1495757-1495844,1496248-1496342,1496506-1496605,
           1496765-1496879,1497077-1497241,1497362-1497547
          Length = 400

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -1

Query: 525 IGGTDSRPRSRVLLLDLVDS---GASHVLSCHHSF--HLLRAEFPDVSDFKTVRGPSGLA 361
           + G +  P  R++LL   +S   G+ H  S   S   HLL  E P++S     RG   LA
Sbjct: 274 VSGANWDPEGRIVLLSFSNSTTLGSIHFSSKPPSLDAHLLPVEHPEISSLIVSRGIDKLA 333


>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
          Length = 509

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -2

Query: 374 LLDLLEGIAFECAYGFHL--STVSAVLFELFA 285
           L+D+L G+  +  +GFHL  S + A++ ++FA
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFA 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,409,887
Number of Sequences: 37544
Number of extensions: 338580
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)