Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J04
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)                 29   4.3  
SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   5.7  
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 28   7.5  
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   7.5  
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)                  27   9.9  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 285 GEEFEEDRADGAKVKSVCTFEGNTLK 362
           G+E E+D  DG+K  S CTFEG T++
Sbjct: 25  GDEHEKDLRDGSKRISGCTFEGITMQ 50


>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
          Length = 437

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 540 AGCSRIGGTDSRPRSRVLLLDLVDSGASHVLSCHHSFHLLRAE 412
           AG +R+GG D   R    LL L+    +  L+C      LR E
Sbjct: 252 AGNNRLGGQDFNARFMQYLLQLIHKRFNRQLTCSEDIQRLRQE 294


>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 178 KPPTLSPRPWSSVRMVTNTI 237
           KP  L P PW  VR+ TN I
Sbjct: 56  KPNPLGPEPWYKVRLPTNVI 75


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 178 KPPTLSPRPWSSVRMVTNTI 237
           KP  L P PW  VR+ TN I
Sbjct: 81  KPNPLGPEPWYKVRLPTNVI 100


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 160 TPMVFMNSSKFSEEVILYFLPTNSIFID*LYRFKRKVFNASVF 32
           TP++ + +SK    ++++F P NS+    LY F  K F   +F
Sbjct: 527 TPLIDVTASK---TLLVFFFPINSLCNPFLYAFFTKAFKRELF 566


>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 672

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 198 PTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 329
           P  +L ++GDE    +  T KTTE K   G+    +R+    VK
Sbjct: 46  PDSQLEEEGDESEDTSKLTGKTTEEKQNSGKLITTERSKTGHVK 89


>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
          Length = 1002

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 358 SSKSRRPPXGLEVTYVREFGPEEMKAVMTAKDVTCTRVYKVQ*KDSTPRSGVGAAD 525
           +  SRR P G+   ++R+ G +  KA   AK   C  V +      T RSG+G+ +
Sbjct: 538 ADSSRRRPTGVHRCHIRKGGAQWCKA-RGAKSEVCRVVPQEAWVRVTTRSGLGSEE 592


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 238 KLYSSPSLRSSTVGVTALAALRVIRPTPMV 149
           +L+ SP+LRS  +G+   +AL+ + P  MV
Sbjct: 13  RLFHSPNLRSDAIGIFR-SALKAVTPQEMV 41


>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 277 NFISVVLKVEEVTKLYSSPSLRSSTVGVTALAAL-RVIRPTPMVFMNSSKFSEEVILYFL 101
           NF+  V   E    +   P +  +  G T+  ++ R  +PTP+    +    E +  YF+
Sbjct: 387 NFVQHVGLPERQLAIRVCPRMGKAHNGETSYGSIKRRAQPTPLNVQRTQGGHEGIAFYFI 446

Query: 100 PTNSIFID 77
            + S+FI+
Sbjct: 447 FSGSVFIN 454


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,542,645
Number of Sequences: 59808
Number of extensions: 376507
Number of successful extensions: 1112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)