Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J04
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...   128   5e-32
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    50   1e-08
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    50   2e-08
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    26   0.36 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.4  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score =  128 bits (309), Expect = 5e-32
 Identities = 58/95 (61%), Positives = 75/95 (78%)
 Frame = +3

Query: 90  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 269
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK TE
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 270 MKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQK 374
           +KFK GEEFEE+  DG KVKSVCT +GN L QVQK
Sbjct: 63  IKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQK 97



 Score = 41.9 bits (94), Expect = 5e-06
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +1

Query: 391 EVTYVREFGPEEMKAVMTAKDVTCTRVYKVQ 483
           + T  REF   EMKA+M   D+ CTRVYK+Q
Sbjct: 101 QTTIEREFSSTEMKAIMKVDDIICTRVYKIQ 131


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 50.4 bits (115), Expect = 1e-08
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +3

Query: 87  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 266
           ++F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T 
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTY 59

Query: 267 EMKFKPGEEFEE--DRADGAKVKSVCTFEGNTLK 362
              FK    FEE        K ++V + EGNT K
Sbjct: 60  TKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFK 93


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +3

Query: 90  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 269
           +F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T  
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYT 58

Query: 270 MKFKPGEEFEE--DRADGAKVKSVCTFEGNTLK 362
             FK    FEE        K ++V + EGNT K
Sbjct: 59  KTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFK 91


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -1

Query: 537 GCSRIGGTDSRPRSRVLLLDLVDSGASHVLSCHHSFHLLRAEFPDVSDFKTV 382
           GC          RSR+  L   D G S   S   +  L+R E  D  D +T+
Sbjct: 13  GCDEQTSRGDNDRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTL 64


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 274 FISVVLKVEEVTKLYSSPSLRSSTV 200
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,287
Number of Sequences: 438
Number of extensions: 3215
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)