Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J04
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    28   4.7  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    28   6.1  
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   8.1  
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR...    27   8.1  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   8.1  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   8.1  

>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 159 VGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADG 317
           VG   ++  N     VEL +D     L   S+ K    K + G+E +   ADG
Sbjct: 18  VGKKIQRKKNEKVSNVELSEDPQAAQLQAKSSEKPNRKKIQKGKEIKSSPADG 70


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 26  GAKNRRIKNLSLKSIKLIYKNGIRRQEIQDDFLREL**VHEDHRRGSDH 172
           G++N RIK  S K I L   +       Q+D   E+  V  DH + SDH
Sbjct: 173 GSENVRIKKASDKEIAL---DSASMSSAQEDHQEEILKVESDHLQVSDH 218


>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 111 KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 224
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 576 CIE*MLNXHN-CAAGCSRIGGTDSRPRS-RVLLLDLVDS 466
           CI+ + N H+ C +GC R+      PRS ++L  D  DS
Sbjct: 779 CIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDS 817


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 111 KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 218
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 111 KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 218
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,932,483
Number of Sequences: 28952
Number of extensions: 260281
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)