Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_J01
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 83 2e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 82 4e-17
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 79 4e-16
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 28 0.96
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 2.9
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 5.1
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.1
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 5.1
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 6.8
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 25 6.8
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 6.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.0
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 83.4 bits (197), Expect = 2e-17
Identities = 34/61 (55%), Positives = 53/61 (86%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
L +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG EKL+++P G
Sbjct: 9 LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68
Query: 287 G 289
G
Sbjct: 69 G 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 82.2 bits (194), Expect = 4e-17
Identities = 35/61 (57%), Positives = 53/61 (86%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
L +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG EKLS++P
Sbjct: 9 LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68
Query: 287 G 289
G
Sbjct: 69 G 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 79.0 bits (186), Expect = 4e-16
Identities = 32/61 (52%), Positives = 53/61 (86%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
L +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG EKL+++P G
Sbjct: 9 LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSG 68
Query: 287 G 289
G
Sbjct: 69 G 69
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 0.96
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = -3
Query: 267 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAK*IRGHV 88
SF P+A + S P+SS+ +F + SA+++ P+ + S A P +T+ I
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKE 510
Query: 87 THFLSPN 67
SPN
Sbjct: 511 KPARSPN 517
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 219 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTA 109
SSV T LS SAS+SIP + STS ++ V+P S++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSS 46
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 267 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAA 136
SF+ PA+ S TSL SS S SAS + + + S+S+A+
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS 113
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 149 VEKILSSVGIEADAEKLKKVITELNG 226
V++I VG+E D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.1
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -3
Query: 291 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLS----FSASASIPTELRIFSTSAAAGVVL 124
PPP SFS I+ ++ +P SS T + ++ S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 123 PPS 115
P S
Sbjct: 246 PTS 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 417 TKLYKSTRRWSLFQFMF 467
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -3
Query: 234 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 109
T LP ++V T SFS SAS T +++ +V PPST+
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTS 76
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 249 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 109
++S S+ L S++ T S +AS+PT I S S P+T+
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTS 125
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -3
Query: 171 TELRIFSTSAAAGVVLPPSTAK*IRGHVTHFL 76
T + S G VLPP + K GH F+
Sbjct: 75 TATHVHGASGFEGAVLPPPSRKENEGHAVDFI 106
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 234 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPS 115
+ L + S T +S S+ S+PT+ + T + + V PPS
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPS 565
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Frame = -3
Query: 288 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVV 127
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 126 LPPSTAK*IRGHVTHFLSP 70
+P + + +T + P
Sbjct: 235 IPTGGSSSLSTPITPTVPP 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,961
Number of Sequences: 5004
Number of extensions: 22003
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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