Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_J01
         (518 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17887-1|AAA36472.1|  115|Homo sapiens protein ( Human acidic ri...    82   1e-15
CR542248-1|CAG47044.1|  115|Homo sapiens RPLP2 protein.                82   1e-15
CR542212-1|CAG47008.1|  115|Homo sapiens RPLP2 protein.                82   1e-15
BC062314-1|AAH62314.1|  115|Homo sapiens ribosomal protein, larg...    82   1e-15
BC007573-1|AAH07573.1|  115|Homo sapiens ribosomal protein, larg...    82   1e-15
BC005920-1|AAH05920.1|  115|Homo sapiens ribosomal protein, larg...    82   1e-15
BC005354-1|AAH05354.1|  115|Homo sapiens ribosomal protein, larg...    82   1e-15
AB061837-1|BAB79475.1|  115|Homo sapiens ribosomal protein P2 pr...    82   1e-15
AK126665-1|BAC86634.1| 1012|Homo sapiens protein ( Homo sapiens ...    31   2.4  
AB127405-1|BAD03968.1| 1183|Homo sapiens SNAP-25-interacting pro...    31   2.4  
AB051471-1|BAB21775.1|  762|Homo sapiens KIAA1684 protein protein.     31   2.4  
U33839-1|AAA75594.1|  264|Homo sapiens potassium channel protein.      29   7.4  

>M17887-1|AAA36472.1|  115|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P2 mRNA, complete cds. ).
          Length = 115

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           LA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G  KL+S+P G
Sbjct: 9   LAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAG 68

Query: 287 GGXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 418
           G                                       MGFGLFD
Sbjct: 69  GAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>CR542248-1|CAG47044.1|  115|Homo sapiens RPLP2 protein.
          Length = 115

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           LA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G  KL+S+P G
Sbjct: 9   LAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAG 68

Query: 287 GGXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 418
           G                                       MGFGLFD
Sbjct: 69  GAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>CR542212-1|CAG47008.1|  115|Homo sapiens RPLP2 protein.
          Length = 115

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           LA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G  KL+S+P G
Sbjct: 9   LAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAG 68

Query: 287 GGXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 418
           G                                       MGFGLFD
Sbjct: 69  GAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>BC062314-1|AAH62314.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           LA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G  KL+S+P G
Sbjct: 9   LAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAG 68

Query: 287 GGXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 418
           G                                       MGFGLFD
Sbjct: 69  GAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>BC007573-1|AAH07573.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           LA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G  KL+S+P G
Sbjct: 9   LAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAG 68

Query: 287 GGXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 418
           G                                       MGFGLFD
Sbjct: 69  GAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>BC005920-1|AAH05920.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           LA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G  KL+S+P G
Sbjct: 9   LAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAG 68

Query: 287 GGXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 418
           G                                       MGFGLFD
Sbjct: 69  GAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>BC005354-1|AAH05354.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           LA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G  KL+S+P G
Sbjct: 9   LAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAG 68

Query: 287 GGXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 418
           G                                       MGFGLFD
Sbjct: 69  GAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>AB061837-1|BAB79475.1|  115|Homo sapiens ribosomal protein P2
           protein.
          Length = 115

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
 Frame = +2

Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
           LA LGG ++P+A D++KIL SVGIEAD ++L KVI+ELNGK++E +IA G  KL+S+P G
Sbjct: 9   LAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAG 68

Query: 287 GGXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 418
           G                                       MGFGLFD
Sbjct: 69  GAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>AK126665-1|BAC86634.1| 1012|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44709 fis, clone BRACE3019570, highly  similar
           to Rattus norvegicus SNAP-25-interacting protein (SNIP).
           ).
          Length = 1012

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 122 GKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR-EKLSSMP 280
           G  TP    V+K +S    E D E+ +  +T+ + KD+ +L+   + E L ++P
Sbjct: 765 GLDTPGKRSVDKAVSVEAAERDWEEKRAALTQYSAKDINRLLEETQAELLKAIP 818


>AB127405-1|BAD03968.1| 1183|Homo sapiens SNAP-25-interacting protein
            protein.
          Length = 1183

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 122  GKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR-EKLSSMP 280
            G  TP    V+K +S    E D E+ +  +T+ + KD+ +L+   + E L ++P
Sbjct: 893  GLDTPGKRSVDKAVSVEAAERDWEEKRAALTQYSAKDINRLLEETQAELLKAIP 946


>AB051471-1|BAB21775.1|  762|Homo sapiens KIAA1684 protein protein.
          Length = 762

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 122 GKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR-EKLSSMP 280
           G  TP    V+K +S    E D E+ +  +T+ + KD+ +L+   + E L ++P
Sbjct: 472 GLDTPGKRSVDKAVSVEAAERDWEEKRAALTQYSAKDINRLLEETQAELLKAIP 525


>U33839-1|AAA75594.1|  264|Homo sapiens potassium channel protein.
          Length = 264

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 273 DDSFSRPAAISCSTSLPLSSVITF-LSFSASASIPTELRIFSTSA 142
           D    RP AISC  ++  SS I + + F  S+ +P   ++ ST+A
Sbjct: 126 DSGGIRPCAISCDKNVTTSSAICWHMGFWLSSILPASGKLVSTTA 170


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,509,503
Number of Sequences: 237096
Number of extensions: 764475
Number of successful extensions: 1780
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)