Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_J01
(518 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 74 5e-14
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 74 5e-14
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 74 5e-14
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 72 2e-13
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 72 2e-13
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 72 2e-13
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 61 5e-10
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 60 1e-09
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 32 0.27
At1g67140.1 68414.m07638 expressed protein 30 1.1
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi... 29 2.5
At5g41530.1 68418.m05046 hypothetical protein similar to unknown... 27 7.6
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 27 7.6
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 74.1 bits (174), Expect = 5e-14
Identities = 33/62 (53%), Positives = 48/62 (77%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
LAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P G
Sbjct: 9 LAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68
Query: 287 GG 292
GG
Sbjct: 69 GG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 74.1 bits (174), Expect = 5e-14
Identities = 33/62 (53%), Positives = 48/62 (77%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
LAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P G
Sbjct: 9 LAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68
Query: 287 GG 292
GG
Sbjct: 69 GG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 74.1 bits (174), Expect = 5e-14
Identities = 33/62 (53%), Positives = 48/62 (77%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
LAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P G
Sbjct: 9 LAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68
Query: 287 GG 292
GG
Sbjct: 69 GG 70
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 72.1 bits (169), Expect = 2e-13
Identities = 30/62 (48%), Positives = 48/62 (77%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
LAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GREKL+S+P G
Sbjct: 9 LAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSG 68
Query: 287 GG 292
GG
Sbjct: 69 GG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 72.1 bits (169), Expect = 2e-13
Identities = 30/62 (48%), Positives = 48/62 (77%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
LAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GREKL+S+P G
Sbjct: 9 LAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSG 68
Query: 287 GG 292
GG
Sbjct: 69 GG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
LAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P G
Sbjct: 9 LAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68
Query: 287 GG 292
GG
Sbjct: 69 GG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/62 (45%), Positives = 41/62 (66%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
LA L G P+ AD++KI+ SVG E D EK+ + + +DV +LIA GREK++++ G
Sbjct: 9 LAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKMAALSSG 68
Query: 287 GG 292
GG
Sbjct: 69 GG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 107 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 286
LA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGREK+S++ G
Sbjct: 9 LAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSALSSG 68
Query: 287 G 289
G
Sbjct: 69 G 69
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +2
Query: 92 WPRI-YLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVE----QLIAAG 256
W R Y+ + T A E++L G+E +K+++TE NG+ +E +L+A+G
Sbjct: 306 WNRTDYVRIQANGLTSGGA--EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASG 363
Query: 257 REKLSSMP 280
+ L P
Sbjct: 364 KSSLPPSP 371
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -2
Query: 268 QLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVS 143
Q L++GR L+++L L++LS SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 510
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 140 AADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 271
A+ VE +S+ DAE++ K++T+ VE L+ KLS
Sbjct: 50 ASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93
>At5g41530.1 68418.m05046 hypothetical protein similar to unknown
protein (pir |T01544)
Length = 142
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 232 ILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRGLATQHSQVNTRPRNAFFK 74
IL LS+Y KL+ + GAE + + W+ L + +N + + F K
Sbjct: 45 ILFQGLSEYQKKLMFPNLKNLGAETIKELIDEWKELNVEELNLNIKKQTFFTK 97
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -2
Query: 217 LSDYFLKLLSVSFDTDGAEDLLNVSG---SWRGL 125
L+ YF ++ SF D +L NVSG W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,940,967
Number of Sequences: 28952
Number of extensions: 116820
Number of successful extensions: 361
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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