Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I22
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 34 0.013
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 27 2.7
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 3.6
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 4.7
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 4.7
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 6.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 6.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 6.2
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 8.3
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 25 8.3
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 34.3 bits (75), Expect = 0.013
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 436 DKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEPDFLKTN 561
D +G+ KD+V E N+DS EE N LD+E +D P+ L +
Sbjct: 3959 DMNGVTKDSVVSENENSDSEEE--NQDLDEEVNDIPEDLSNS 3998
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 277 KEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLL-DKDGIV 453
K + RA+ + + + P I++ R N++ +V +DPI++LL D D V
Sbjct: 81 KPTEAKRAVKLILNDIYSSNPMIRSLAL--RTLTSVNIKNFWVAAMDPIVRLLDDTDPYV 138
Query: 454 KDTVAI 471
+ T AI
Sbjct: 139 RKTAAI 144
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 112 TYDGAVAEFSTEDCASLGFIKANLLCSSC 198
TYD ++A+ D ++L KAN LC+ C
Sbjct: 405 TYDSSLAD-DHSDTSNLSKDKANTLCAQC 432
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 127 VAEFSTEDCA-SLGFIKANLL-CSSCDQLKDFSLEQLIDHCKECCHSD 264
V +S + C S+G++K L C +C + SL + C CH+D
Sbjct: 27 VLPYSFDTCTYSMGYLKQPLYACLTCQKASG-SLNAVCYSCSISCHAD 73
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 145 EDCASLGFIKANLLCSSCDQLK 210
EDC LG I+ ++ C SC + K
Sbjct: 494 EDCVLLGEIRCHIGCLSCTKCK 515
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 380 NFAGLSLFTKAWICGYAGNLHVQTS 306
NFA + +F W G GNL V ++
Sbjct: 170 NFASICVFDALWSFGVGGNLPVDSA 194
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 187 CSSCDQLKDF-SLEQLIDHCKECCHSDESASKE 282
C +C F ++E+++ H KEC + DE+ +
Sbjct: 21 CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 187 CSSCDQLKDF-SLEQLIDHCKECCHSDESASKE 282
C +C F ++E+++ H KEC + DE+ +
Sbjct: 21 CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 19 FENY*VRRKCEEISV*VVKMYWKCFVLAVLVTYDGAVAEFSTEDCASLGFIKANLL 186
F+ Y + C + V+MY F+ + +G ++ FS+ +LG++K L
Sbjct: 269 FKKYQILEACRD-----VRMYLYFFLQIAVAIPNGGLSNFSSIMLKNLGYVKGKAL 319
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 45 VRGNKRLGSKNVLEVF 92
VRGNKR+ SKN E F
Sbjct: 146 VRGNKRIDSKNAEEGF 161
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = -3
Query: 512 VFKNSSTESVFHFSMATVSFTMPSLSSSLIIGSKPRTYLI*RLGNFAGLSLFTKAWICGY 333
+F S + F +++ + + L I + PR Y + NF+ L F +A IC
Sbjct: 74 IFSESKMDFQFPLFLSSCQMLVQMGFAKLTILAFPR-YQPNKKDNFSWLEYFYRAGICAL 132
Query: 332 AGNLHVQTSN 303
L + SN
Sbjct: 133 VTGLDIGLSN 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,669
Number of Sequences: 5004
Number of extensions: 48564
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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