Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I22
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861... 90 1e-18
08_01_0451 + 3979323-3979566,3979649-3980012,3980112-3980330,398... 29 2.1
05_01_0328 - 2571155-2571627,2571894-2572197 29 2.8
04_01_0616 - 8069107-8069217,8070127-8070499,8070514-8070751,807... 29 3.7
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897 28 4.8
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380... 28 6.4
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 6.4
07_01_0565 + 4188387-4190570 27 8.5
02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165 27 8.5
02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071 27 8.5
>01_06_1645 +
38884606-38884777,38885509-38885567,38885933-38886114,
38886559-38886634
Length = 162
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Frame = +1
Query: 136 FSTEDCASLGFIKANLLCSSCDQLKDFSLEQ-LIDHCKECCHSDESASKEK-KYARAILE 309
F +C LGF LCS C+ L +F +Q L++ C++CC D S K ++ AI+E
Sbjct: 28 FGARECEELGFTGL-ALCSDCNALAEFVKDQELVEDCRKCCTEDSDDSISKLTFSGAIIE 86
Query: 310 VCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTD 489
VC K YP+I F++ D+ FP ++ +YV G P + +LD G K+T+ I+ W +
Sbjct: 87 VCMRKLVFYPEIVGFLEEDKD-DFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWKRE 145
Query: 490 SVEEFL 507
+ +FL
Sbjct: 146 HIRQFL 151
>08_01_0451 +
3979323-3979566,3979649-3980012,3980112-3980330,
3980713-3980872,3981680-3981817,3982161-3982448
Length = 470
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 43 KCEEISV*VVKMYWKCFVLAVLVTYDGAVAEFSTEDCASLGFIK 174
KC E ++ + Y KCF L +L T+D E T + + ++K
Sbjct: 276 KCNESAIVRLPEYMKCFYLYLLKTFDLIEEELGTSNSYRVFYLK 319
>05_01_0328 - 2571155-2571627,2571894-2572197
Length = 258
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = +1
Query: 208 KDFSLEQLIDHCKECCHSDESASKEKKYARAILEVCTCK 324
K + + + DHC++ D++ +K+++Y+ A + C+
Sbjct: 133 KLYQIVVICDHCEDSFRQDKAVNKQRRYSEARITEIDCE 171
>04_01_0616 -
8069107-8069217,8070127-8070499,8070514-8070751,
8070881-8071189,8071225-8071363
Length = 389
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 130 PQLHHMSLARLKRNTSNTFLLPKRLFPRTFDELNNFQNKFSE 5
P++ H S+ R+K + +L PR D L +F FSE
Sbjct: 231 PRMEHCSMGRIKYGPNPQNFKEVKLQPRRTDSLIDFMMNFSE 272
>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
Length = 553
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 503 NSSTESVFHFSMATVSFTMPSLSSSL 426
N+ T V F+ ATV FT+PS+++ L
Sbjct: 296 NADTPGVSTFNTATVGFTLPSVTTRL 321
>12_02_0272 -
16634765-16635004,16635412-16635457,16636107-16638098,
16639478-16640286
Length = 1028
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 478 WNTDSVEEFLNTHLDKEHDDEPDFLKTNRI*C 573
W T+S+ ++L+ HLD D N + C
Sbjct: 725 WPTESILDYLSQHLDTPASSHSDLFSPNLVAC 756
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +1
Query: 199 DQLKDFSLEQLIDHCKECCHSDESASKEKKYARAILEVCTCKFPAYPQIQAFVKSD 366
D L+++S++ I + CHS + + K + + TC+ A + ++ V+ D
Sbjct: 417 DVLRNYSVKPRIGELRTACHSFGPSGRTKIPKKGVTTGYTCRLAAPERHKSIVRPD 472
>07_01_0565 + 4188387-4190570
Length = 727
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 208 KDFSLEQLIDHCKECCHSDESASKEKKYARAILEVCTCKFP 330
K + I K+C + E+ E KY ILE C K P
Sbjct: 592 KKGEINAAISLVKDCLGNVENGPMEFKYTLTILEACQSKSP 632
>02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165
Length = 160
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +1
Query: 130 AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLIDHCKECCHS--DESASKEKKYARA 300
A + C FIK + + +KD ++ ID C C++ E + KK A +
Sbjct: 46 APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104
>02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071
Length = 136
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +1
Query: 130 AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLIDHCKECCHS--DESASKEKKYARA 300
A + C FIK + + +KD ++ ID C C++ E + KK A +
Sbjct: 46 APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,548,200
Number of Sequences: 37544
Number of extensions: 258224
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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