Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I22
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   3e-18
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   28   5.0  
SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12)                  28   5.0  
SB_53480| Best HMM Match : Sigma70_r1_1 (HMM E-Value=5.7)              28   6.6  
SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_12321| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_57900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.6  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_31932| Best HMM Match : DUF229 (HMM E-Value=1.4013e-45)             27   8.7  
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)                    27   8.7  

>SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 54.8 bits (126), Expect(2) = 3e-18
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +1

Query: 130 AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLIDHCKECCHSDESASKEKKYAR 297
           ++ + E C  LG + +NLLC SCD+LK F +++++ +C  CCH +       K+ R
Sbjct: 23  SKLTPEQCRELG-LSSNLLCGSCDELKQFKMDEIVKNCWLCCHEEGDGQDAAKFVR 77



 Score = 54.4 bits (125), Expect(2) = 3e-18
 Identities = 23/37 (62%), Positives = 31/37 (83%)
 Frame = +1

Query: 397 KYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFL 507
           K+VRG DPI+KL   DG +K+ ++IEKW+TD+VEEFL
Sbjct: 74  KFVRGSDPILKLHGDDGGIKEELSIEKWDTDNVEEFL 110


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 391  QIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTH 516
            +IKY  G DP+++L D +G    TV + +     +   + +H
Sbjct: 1185 KIKYNPGHDPVMRLYDDNGKEVKTVDVAEMGRQDIVNLVESH 1226


>SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12)
          Length = 387

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +1

Query: 439 KDGIVKDTVAIEKWNTD---SVEEFLNTHLDKEHDDEPDFLKTNR 564
           KD +V++T+     N D   S+E+ L    +KE D+EPD++KT R
Sbjct: 205 KDVVVEETLDDIDKNKDGYVSLEDDLYPESEKE-DEEPDWVKTER 248


>SB_53480| Best HMM Match : Sigma70_r1_1 (HMM E-Value=5.7)
          Length = 402

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 139 STEDCASLGFIK-ANLLCSSCDQLKDFSLEQLIDHCKECCHSDESASKEKKYARA 300
           +T   A LG I+   ++ S    L   +L  +ID+ KEC  + ESA K +   RA
Sbjct: 327 TTVSFAHLGSIQNLAVVASIIVNLSAINLWTVIDNAKECSENAESALKARDQMRA 381


>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +1

Query: 163 GFIKANLLCSSCDQ-----LKDFSLEQLIDHCKECCH 258
           GFI+  +LCSSC+      + D   E++  +CK C H
Sbjct: 92  GFIERFVLCSSCENPETVLVVDTRKERIGQNCKACGH 128


>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
 Frame = +1

Query: 238 HCKECCHSDESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLD 417
           H K+   S     K+ K    +L+V   +FPA+  + A       A F N  ++  +G+ 
Sbjct: 20  HAKDILTSVNKLRKDGKLCDVVLQVEKKEFPAHRIVLASCSDYFYAMFTNDMLESQKGVI 79

Query: 418 PIIKLLDK------DGIVKDTVAIEKWNTDSVEEFLNTH 516
            +  L         D +  +TV ++  N   +  F +TH
Sbjct: 80  ELQGLASDTMEVLLDFVYTETVKLDPTNCLGIRAFADTH 118


>SB_12321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
 Frame = +1

Query: 109 VTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLIDHCKECCHSDESASKEKK 288
           VT+ G +  F +     +   +  +     D+ ++   +Q ID  K CC +    +  K 
Sbjct: 209 VTHKGPIIRFCSLSMPVIDMNEPIVHVDEIDKEEETQTKQNIDPTKRCCRNFMIFTDAKN 268

Query: 289 YARAILEVCTCKFPAYPQIQAFVKSDRPAKF--PNLQIKY 402
           +  A       K P YPQ      +  PA++  P  Q+ Y
Sbjct: 269 FPDAYFPT---KKPKYPQRTYCPVTGLPARYLDPITQLPY 305


>SB_57900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 334 YPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGI 450
           +P  Q   K  R  +FP  +++ +  LDP ++L +K+ +
Sbjct: 20  HPATQEEEKPSRMTQFPQTRVRNMMKLDPDLQLANKEAV 58


>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 757

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 353 KAWICGYAGNLHVQTSNMAR 294
           K +IC Y G    QTSN+AR
Sbjct: 412 KPYICHYCGKAFAQTSNLAR 431


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 196 CDQLKDFSLEQLIDHCKECCHSDESASKEKKYARAIL 306
           C   + F+LEQ + +    CH+ E  +K +   R IL
Sbjct: 3   CRIQRGFALEQPVPYNSHSCHAMEKDNKTRNMGRVIL 39


>SB_31932| Best HMM Match : DUF229 (HMM E-Value=1.4013e-45)
          Length = 572

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +1

Query: 157 SLGFIKANLLCSSCDQLKDFSLEQLIDHCKECCHSDESASKEKKYARAILEVCTCKFPAY 336
           +LG IK  L     ++L+ F +     HC  C       +K+  Y  A+ ++    FP  
Sbjct: 350 TLGEIKVALREMPNEKLQKFKMSYQDHHCDSCGAMFGEKAKDTMYRDALYQIHFVTFPNN 409

Query: 337 PQIQAFVK 360
              +A VK
Sbjct: 410 GFYEASVK 417


>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
          Length = 1307

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 202 QLKDFSLEQLIDHCKECCHSDESASKEKKYARAILEVC 315
           Q + F +EQ    C  CC  +  A ++ K+  AI  +C
Sbjct: 103 QSRVFKMEQTPQKCMSCC-KNTHARRDCKFYNAICRIC 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,910
Number of Sequences: 59808
Number of extensions: 332403
Number of successful extensions: 813
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)