Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I22
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024211-2|AAF36064.2| 152|Caenorhabditis elegans Hypothetical ... 117 7e-27
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 28 4.3
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 28 4.3
Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical p... 28 5.7
Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical p... 28 5.7
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 27 7.5
U80840-6|AAB37934.1| 317|Caenorhabditis elegans Hypothetical pr... 27 10.0
U42439-6|AAA83510.1| 266|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine r... 27 10.0
>AC024211-2|AAF36064.2| 152|Caenorhabditis elegans Hypothetical
protein Y76B12C.3 protein.
Length = 152
Score = 117 bits (281), Expect = 7e-27
Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 5/152 (3%)
Frame = +1
Query: 82 WKCFVL--AVLVTYDGAVAEFS--TEDCASLGFIKANLLCSSCDQLKDFSLEQLIDHCKE 249
W F+L AV+ G V E+ E+C + GF L C C++L D+ LE L+ C +
Sbjct: 2 WVIFLLLAAVVSPMFGEVEEYKIDVEECKAAGFNPETLKCGLCERLSDYHLETLLTDCLQ 61
Query: 250 CCHSDESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKF-PNLQIKYVRGLDPII 426
CC +E K +KY AILEVC C +PQ+QAFV D +F +++K+VRG+ P +
Sbjct: 62 CCIKEEE-FKHEKYPTAILEVCECNLARFPQVQAFVHKDMARQFGGKVKVKHVRGVRPQV 120
Query: 427 KLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLD 522
L D D K+ +++EKW+TD++ +F N L+
Sbjct: 121 ALKDADFKTKEVLSVEKWDTDTLIDFFNQWLE 152
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +1
Query: 190 SSCDQLKDFSLEQLIDHCKECCHSDESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDR 369
S+C Q K F + C EC H +E R+ + VC+ PA P + A + +
Sbjct: 568 SACHQSK-FVMTAFEGKCDECLHVQCRYGEE---CRSGVCVCSYNCPANPPLSARICGEN 623
Query: 370 PAKFPNL 390
+P+L
Sbjct: 624 GVLYPSL 630
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +1
Query: 190 SSCDQLKDFSLEQLIDHCKECCHSDESASKEKKYARAILEVCTCKFPAYPQIQAFVKSDR 369
S+C Q K F + C EC H +E R+ + VC+ PA P + A + +
Sbjct: 576 SACHQSK-FVMTAFEGKCDECLHVQCRYGEE---CRSGVCVCSYNCPANPPLSARICGEN 631
Query: 370 PAKFPNL 390
+P+L
Sbjct: 632 GVLYPSL 638
>Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical
protein C41C4.5b protein.
Length = 887
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 295 RAILEVCTCKFPAYPQIQAFVKSDRPAKFPNL 390
+ I+E C C P YP + F + +P + N+
Sbjct: 560 KVIVEACGCADPMYPVAEMFGNNTKPCQAVNM 591
>Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical
protein C41C4.5a protein.
Length = 849
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 295 RAILEVCTCKFPAYPQIQAFVKSDRPAKFPNL 390
+ I+E C C P YP + F + +P + N+
Sbjct: 522 KVIVEACGCADPMYPVAEMFGNNTKPCQAVNM 553
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 196 CDQLKDFSLEQLIDHCKEC-----CHSDESASKEKKYARAILEVCTC 321
CD LKD S ++CKEC C + EKK ++L C
Sbjct: 144 CDGLKDCSDGSDEENCKECQSIYSCRAHIEEESEKKDKTSVLPTLIC 190
>U80840-6|AAB37934.1| 317|Caenorhabditis elegans Hypothetical
protein F08D12.11 protein.
Length = 317
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 368 LSLFTKAWICGYAGNLHVQTSNMARAYFFSFEA 270
L++F K WI G+ GNL++ +S EA
Sbjct: 235 LNIFLKHWIIGFIGNLNMVQLKKHDGRMWSLEA 267
>U42439-6|AAA83510.1| 266|Caenorhabditis elegans Hypothetical
protein F19C7.1 protein.
Length = 266
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 91 FVLAVLVTYDGAVAEFSTEDCASLGFIKAN 180
F + Y AVA+F T++C S F N
Sbjct: 3 FAIVFAALYGAAVAQFGTDNCVSAQFQACN 32
>AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine
receptor, class h protein190 protein.
Length = 333
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 91 FVLAVLVTYDGAVAEFSTED-CASLGFIKANLLCSSCDQLKDFSLEQ 228
FVLA TY A F C +GF L+ +S QLKD + +
Sbjct: 187 FVLASDYTYQLIAAVFIISQLCFEIGFFVTYLVWNSYKQLKDMKISK 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,610,427
Number of Sequences: 27780
Number of extensions: 259189
Number of successful extensions: 832
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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