Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I22
(592 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 26 0.32
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 26 0.32
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 23 1.7
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 23 1.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 3.0
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 3.0
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 22 3.9
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 6.8
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 21 6.8
AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone este... 21 9.0
AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein. 21 9.0
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 25.8 bits (54), Expect = 0.32
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 403 VRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFL 507
+RG I+K + V D V + W+TD EEF+
Sbjct: 115 IRGNSAILKCV-VPSFVADFVKVLSWHTDQGEEFV 148
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 25.8 bits (54), Expect = 0.32
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +1
Query: 304 LEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWN 483
+ V + Y F K + + L ++ + D + L+DK K IE W+
Sbjct: 1 MNVLHIHYQHYHITPVFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEIWD 60
Query: 484 TDSVEEFLNT 513
+V+E N+
Sbjct: 61 QMTVKELANS 70
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 23.4 bits (48), Expect = 1.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 304 IWLERISFLLKLIHL 260
+WL++I LL++IHL
Sbjct: 5 MWLQQIFILLQMIHL 19
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 23.4 bits (48), Expect = 1.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1
Query: 187 CSSCDQLKDFSLEQLIDHCKECCHSD 264
C CD++++ Q + C+ HSD
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSD 353
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 3.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 100 AVLVTYDGAVAEFSTEDCASLGFIK 174
AV+ +DG V + C +LG++K
Sbjct: 166 AVISMHDGLVLYTTPSICTALGYLK 190
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.6 bits (46), Expect = 3.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 100 AVLVTYDGAVAEFSTEDCASLGFIK 174
AV+ +DG V + C +LG++K
Sbjct: 161 AVISMHDGLVLYTTPSICTALGYLK 185
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 22.2 bits (45), Expect = 3.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 523 YRDEYSKILLLNQCSIFRWLRYLLQCHPYQVV*LLG 416
Y E S + + F RYL CHP +V + G
Sbjct: 119 YVSEMSSYVSVLTIVAFSMERYLAICHPLRVYTISG 154
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 475 KWNTDSVEEFLNTHLDKEHDDEPDFLKTN 561
KWN D H+ EH PD + N
Sbjct: 83 KWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 21.4 bits (43), Expect = 6.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 202 QLKDFSLEQLIDHCKECCHSDESASKEK 285
+L+D + +++ E C DE+ + EK
Sbjct: 508 KLEDLEMGTPLENILESCQQDETHAPEK 535
>AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone
esterase protein.
Length = 567
Score = 21.0 bits (42), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 136 TLPQLHHMSLARLKRN 89
T+P+ H+ +ARL RN
Sbjct: 377 TIPKEKHVEVARLIRN 392
>AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein.
Length = 567
Score = 21.0 bits (42), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 136 TLPQLHHMSLARLKRN 89
T+P+ H+ +ARL RN
Sbjct: 377 TIPKEKHVEVARLIRN 392
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,088
Number of Sequences: 438
Number of extensions: 3033
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -