Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I22
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g05720.1 68414.m00596 selenoprotein family protein contains P... 93 1e-19
At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family pr... 31 0.57
At3g63000.1 68416.m07077 NPL4 family protein contains Pfam domai... 29 2.3
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 28 4.1
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t... 27 7.1
At5g53440.1 68418.m06641 expressed protein 27 9.4
At4g30850.2 68417.m04378 expressed protein contains Pfam domain,... 27 9.4
At4g30850.1 68417.m04377 expressed protein contains Pfam domain,... 27 9.4
At2g47970.1 68415.m06002 NPL4 family protein contains Pfam domai... 27 9.4
>At1g05720.1 68414.m00596 selenoprotein family protein contains
Prosite PS00190: Cytochrome c family heme-binding site
signature; similar to 15 kDa selenoprotein (GI:12314088)
{Homo sapiens}
Length = 163
Score = 93.1 bits (221), Expect = 1e-19
Identities = 45/140 (32%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Frame = +1
Query: 94 VLAVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQ-LIDHCKECCHSDES 270
++ +L + A + ST++C LGF LCS C L ++ +Q L+ C +CC D
Sbjct: 16 MILILASTISAKEQLSTKECEDLGF-SGLALCSDCHSLSEYVKDQELVSDCLKCCADDSE 74
Query: 271 ASKEK-KYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDG 447
S K Y+ AILEVC K YP+I F++ ++ KFP+++++Y+ P + +LD+DG
Sbjct: 75 DSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKE-KFPSVKVQYIFNSPPKLIMLDEDG 133
Query: 448 IVKDTVAIEKWNTDSVEEFL 507
K+++ I+ W + + +++
Sbjct: 134 EHKESIRIDNWKREHLLQYM 153
>At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 379
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 403 VRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEH 531
+R + P + +DK I+ DT+A V E NTH +++H
Sbjct: 243 LRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQQH 285
>At3g63000.1 68416.m07077 NPL4 family protein contains Pfam domain,
PF05021: NPL4 family
Length = 413
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 421 IIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDK 525
++K+LD G + T IE NT + L TH+++
Sbjct: 322 LVKILDHQGPLSCTFPIENRNTQTTMRALKTHMER 356
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 367 RPAKFPNLQIKYVRGLDPIIKL-LDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEP 543
RP + +L+ R D IIKL L + D ++ E+ N V++FL+ ++++ DD
Sbjct: 164 RPPRLTHLETSITRHKDHIIKLELILRLLDNDELSPEQVN--DVKDFLDDYVERNQDDFD 221
Query: 544 DF 549
+F
Sbjct: 222 EF 223
>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
UV-B light insensitive ULI3 [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 619
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Frame = +1
Query: 181 LLCSSCDQLKDF---SLEQLIDHCKE-----CCHSDESASKEKKYARAILEVCT 318
L C +CD DF +L + + HC + CH ++ K+ KY I E T
Sbjct: 517 LCCDTCDFDLDFYCANLPKTVKHCYDEHPLSLCHGEDDVIKDNKYWCDICETET 570
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 439 KDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEP 543
KDG K + +K+ D EE + DK+ DD P
Sbjct: 228 KDGKHKGEKSRDKYREDKEEEDIKQKGDKQRDDRP 262
>At4g30850.2 68417.m04378 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 358
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 523 YRDEYSKILLLNQCSIFRWLRYLLQCHPY 437
+R +Y+ I L+ CS F + Y CH Y
Sbjct: 194 WRLDYAGISLMIVCSFFAPIYYAFSCHTY 222
>At4g30850.1 68417.m04377 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 358
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 523 YRDEYSKILLLNQCSIFRWLRYLLQCHPY 437
+R +Y+ I L+ CS F + Y CH Y
Sbjct: 194 WRLDYAGISLMIVCSFFAPIYYAFSCHTY 222
>At2g47970.1 68415.m06002 NPL4 family protein contains Pfam domain,
PF05021: NPL4 family
Length = 413
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 421 IIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDK 525
++++LD G + T IE ++ + L THLD+
Sbjct: 322 LVRILDHQGPLSSTFPIENRSSRATMRALKTHLDR 356
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,665,722
Number of Sequences: 28952
Number of extensions: 232691
Number of successful extensions: 697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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