Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I21
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...   141   9e-35
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    27   3.1  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    26   5.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.5  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    25   9.5  

>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score =  141 bits (341), Expect = 9e-35
 Identities = 65/145 (44%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
 Frame = +1

Query: 208 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWC 387
           ++ Q +VW+D EMTGL++    +ME+A ++TD  L  V    D VI L E  L++MN+WC
Sbjct: 3   NLKQPLVWIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLDEKQLSEMNDWC 62

Query: 388 KVQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEK-ICPLAGNSXYMDRMXLIKYMP 564
             QHG++GLTE C +S+ ++ + E  +L ++  ++P+K    +AGNS + D   L   MP
Sbjct: 63  IEQHGKSGLTERCRQSNLTVKDVENQLLAYIKKYIPKKREALIAGNSVHADVRFLSVEMP 122

Query: 565 KLXDYLHYRCIDVSTVKELAKRWYP 639
           K+ ++LHYR IDVST+KELAKRW P
Sbjct: 123 KIIEHLHYRIIDVSTIKELAKRWCP 147


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +1

Query: 262 ENDHIMEIACLVTDAQLNVVATG--PDIVINLPEVTLNKMNNW 384
           ENDH+ EI CL        + TG     ++    VTL   + W
Sbjct: 204 ENDHVKEITCLAISNDGRWIVTGGLDHRIVIRDSVTLEPQHCW 246


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = -2

Query: 410 PVSPCWTLHQLFILFKVTSGRFITISGPVATTFSCASVTRHAISIMWSFSMSSPVISRSI 231
           PVS   T+  L  LF V + RF+      A T+         +++  SF +S+ ++   +
Sbjct: 95  PVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSFELSADIVG-LL 153

Query: 230 HTIL*AMSTLVFFFIIIFGDTI 165
           + ++   ST +F    IFG  I
Sbjct: 154 YALI---STCIFVSQNIFGSKI 172


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 461 LSASANDVSDLRQASVNPVSPCWTLHQLFILFK 363
           L AS   + DL+Q +++  +P WT   LF+ FK
Sbjct: 36  LKASVK-LKDLKQ-NISRDAPSWTFEHLFVAFK 66


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 475 FVSNHVPEKICPLAGNSXYMDRMXLIKYMPKLXDYLHYRCID 600
           FV N       PL     +  R  L   M  L DYLH+R +D
Sbjct: 108 FVFNWPKHFDIPLLSLPSFDGRAVLYPNMKVLRDYLHWRQVD 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,324
Number of Sequences: 5004
Number of extensions: 46836
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)