Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I21
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0150 - 15750329-15750450,15751554-15751644,15751967-157520...   138   4e-33
04_03_0268 - 13663387-13663505,13663935-13664025,13664788-136648...    66   2e-20
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    30   1.4  
03_05_0187 - 21751374-21752631,21752958-21753399,21753914-21753962     30   1.4  
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309...    29   4.3  
03_01_0626 + 4596022-4596462,4596549-4596667,4596745-4596801,459...    28   7.5  

>02_03_0150 -
           15750329-15750450,15751554-15751644,15751967-15752053,
           15752605-15752660,15752812-15752893,15753141-15753217,
           15754028-15754138,15754744-15754906,15755375-15755433,
           15755882-15756011
          Length = 325

 Score =  138 bits (334), Expect = 4e-33
 Identities = 64/145 (44%), Positives = 89/145 (61%)
 Frame = +1

Query: 208 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWC 387
           D    +VW+DLEMTGLD+  D I+EIAC++TD +L     GPD+VIN  +  L+ M+ WC
Sbjct: 141 DYQMPLVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWC 200

Query: 388 KVQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSXYMDRMXLIKYMPK 567
           K  H  +GLT+  L+S  S  +AE  +L FV  HV      +AGNS Y+D + L  YMP+
Sbjct: 201 KTHHAASGLTQRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLKNYMPQ 260

Query: 568 LXDYLHYRCIDVSTVKELAKRWYPR 642
           L     +  +DVS++  L  RWYP+
Sbjct: 261 LAAIFSHVIVDVSSIMALCIRWYPK 285


>04_03_0268 -
           13663387-13663505,13663935-13664025,13664788-13664874,
           13665849-13665904,13666788-13666841,13667413-13667523,
           13668293-13668419
          Length = 214

 Score = 66.5 bits (155), Expect(2) = 2e-20
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +1

Query: 409 GLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSXYMDRMXLIKYMPKLXDYLHY 588
           GL E  L+SD S  +AE+ +L F+  ++      +AGNS YMD + L KYMP L     +
Sbjct: 98  GLKEKVLQSDISENDAEKQVLDFIRKYIGSATPLIAGNSVYMDLLFLKKYMPHLAAIFSH 157

Query: 589 RCIDVSTVKELAKRWYPR 642
             +DVS++  L  RW+P+
Sbjct: 158 VIVDVSSISALCSRWFPK 175



 Score = 50.0 bits (114), Expect(2) = 2e-20
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = +1

Query: 208 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTD 303
           D  + +VW+DLEMTGLDI  D I+EIAC++TD
Sbjct: 66  DYDKPLVWIDLEMTGLDITKDRILEIACIITD 97


>04_04_0491 - 25605560-25605684,25605826-25605928,25606026-25607592,
            25608694-25610198
          Length = 1099

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = -3

Query: 370  CLKSLQVDL*LYRDLSPLHLAVHLSQDTLFPLCGHFQCQVLSFQDPSIQSSE 215
            C K L V L   + +SP H ++ L ++ +  + G   C+VL FQ+PS+Q S+
Sbjct: 978  CHKKL-VSLRKLQHISPFH-SLRLRKELVQKVSG---CEVLPFQNPSVQDSQ 1024


>03_05_0187 - 21751374-21752631,21752958-21753399,21753914-21753962
          Length = 582

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 374 ILFKVTSGRFITISGPVATTFSCASVTRHAISIMWSFSMSSP 249
           +L  V SG F  +S  VAT   C   TRHA  + + +S  +P
Sbjct: 257 VLSSVLSGFFQEVSSLVATGSPCTDTTRHAHLLDFLYSNMAP 298


>03_04_0151 -
           17729023-17729372,17729441-17730623,17730723-17730953,
           17730975-17731036,17732085-17732157,17737044-17737834,
           17737932-17738004
          Length = 920

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 359 TSGRFITISGPVATTFSCASVTRHAISIMWSFSMSSPVISRSIHT 225
           TSG   T  G      + AS   H+  ++   S+SSP ISRS+ T
Sbjct: 741 TSGNSST-GGAAKQEATTASTEAHSAKVVLKKSLSSPAISRSLTT 784


>03_01_0626 +
           4596022-4596462,4596549-4596667,4596745-4596801,
           4596921-4597159,4597261-4597379,4597488-4597574,
           4597673-4597720
          Length = 369

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 313 LAVHLSQDTLFPLCGHFQCQVLSFQDPSIQSSELC 209
           + +HLS   LFPL    QCQ+ +F   +     LC
Sbjct: 51  IPLHLSFAFLFPLQRFLQCQMKNFASAAASGVALC 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,516,798
Number of Sequences: 37544
Number of extensions: 254983
Number of successful extensions: 538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)