Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I21
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            30   1.4  
SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            30   1.4  
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)            29   2.5  
SB_54282| Best HMM Match : PSD5 (HMM E-Value=2.6)                      29   2.5  
SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)                      29   2.5  
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                29   4.4  
SB_55281| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   5.8  
SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0)             28   5.8  
SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0)             28   5.8  
SB_26932| Best HMM Match : rve (HMM E-Value=3.2)                       28   7.6  
SB_33731| Best HMM Match : Exonuc_X-T (HMM E-Value=6.2e-06)            28   7.6  
SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 460

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 226 VWMDLEMTGLDIENDHIMEIAC 291
           V  D E TGLD  ND I+++AC
Sbjct: 157 VMFDTETTGLDTSNDDIIQLAC 178


>SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 415

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 226 VWMDLEMTGLDIENDHIMEIAC 291
           V  D E TGLD  ND I+++AC
Sbjct: 112 VMFDTETTGLDTSNDDIIQLAC 133


>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 226 VWMDLEMTGLDIENDHIMEIAC 291
           V  D E TGLD  ND I+++AC
Sbjct: 112 VMFDTETTGLDTSNDVIIQLAC 133


>SB_54282| Best HMM Match : PSD5 (HMM E-Value=2.6)
          Length = 81

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 142 YWCKYISEIVSPKIMMKKNTKVDIAQRIVWMDLEMTGLDIENDHIMEIA 288
           Y+  YI+ I++P I   ++     A   +W+  ++T  DI  D ++ ++
Sbjct: 2   YYLAYINAIINPTICTLRSRDFKRALASLWLRRDVTPQDIHRDSVVTVS 50


>SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 226 VWMDLEMTGLDIENDHIMEIAC 291
           V  D E TGLD  ND I+++AC
Sbjct: 20  VMFDTETTGLDTSNDVIIQLAC 41


>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
          Length = 1156

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 473 FRIILSASANDVSDLRQASVNPVSPC 396
           FR I SAS  ++S L  AS+ P+ PC
Sbjct: 13  FRAIRSASVTELSKLDNASLRPLLPC 38


>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 660

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 344 ITISGPVATTFSCASVTRHAISIMWS 267
           +T++   A TF+C+S T    +IMWS
Sbjct: 192 LTVNENAAATFTCSSTTPGKATIMWS 217


>SB_55281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -2

Query: 458 SASANDVSDLRQASV--NPVSPCWTLHQLFILFKVTSGRFITISGPVATTFSCASVTRHA 285
           +AS+   + LR++ V   P    W L   FI+F + SG  +  SG V+       + ++A
Sbjct: 7   TASSTTQATLRESRVMQGPGDAVWILTSAFIIFTMISGFGLVESGMVSRKNEANIMVKNA 66

Query: 284 ISIMW 270
           + +++
Sbjct: 67  LDVIF 71


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 410  PVSPCWTLHQLFILFKVTSGRFITISGPVATTFSCASVTRHAISIMWSFSMSS 252
            PVS C +L  LF+L  +   R+  ++ P+A  + C    +  I  ++S  + S
Sbjct: 1637 PVSVCLSLASLFLLVAMAIDRYFAVTRPLA--YKCLVTKQRIIWAIFSIVLYS 1687


>SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 492

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 419 SVNPVSPCWTLHQLFILFKVTSGRFITISGPVATTFSCASVTRHAISIMW 270
           ++ P    W L   FI+F + SG  +  SG V+       +T++AI +++
Sbjct: 20  NLRPDDATWILTSAFIIFTMQSGFGLLESGMVSRKNETNIMTKNAIDVIY 69


>SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 492

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 419 SVNPVSPCWTLHQLFILFKVTSGRFITISGPVATTFSCASVTRHAISIMW 270
           ++ P    W L   FI+F + SG  +  SG V+       +T++AI +++
Sbjct: 20  NLRPDDATWILTSAFIIFTMQSGFGLLESGMVSRKNETNIMTKNAIDVIY 69


>SB_26932| Best HMM Match : rve (HMM E-Value=3.2)
          Length = 241

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 346 NLPEVTLNKMNNWCKVQHGETGLTEACLKSDTSLAEAERII 468
           NLP+  +    + CK+   +  LT  C K  T   +A+R +
Sbjct: 94  NLPKQIITLFTSICKLHQEQASLTNYCKKPVTKPIQADRFL 134


>SB_33731| Best HMM Match : Exonuc_X-T (HMM E-Value=6.2e-06)
          Length = 275

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 232 MDLEMTGLDIENDHIMEIACL 294
           +D+E TGL   ND I++IAC+
Sbjct: 30  LDVETTGLSKLNDRIVQIACV 50


>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 401 PCWTLHQLFILFKVTSGRFITISGPVATTFSCASVT 294
           P  T H LFI+F +TS   + IS  + TT +  ++T
Sbjct: 183 PTATSHHLFIIFTITSTTIVIIS-TINTTSTVITIT 217


>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 355 EVTLNKMNNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKIC 507
           E+  N   NWC  Q  E+G+    + +D ++A  + + + ++   V EK C
Sbjct: 40  EIQKNTFTNWCNEQIRESGI----VITDLAIAFNDGVTIVYLVESVAEKKC 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,979,690
Number of Sequences: 59808
Number of extensions: 341174
Number of successful extensions: 852
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)