Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I21
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107887-1|AAI07888.1|  237|Homo sapiens REXO2 protein protein.       184   2e-46
BC105026-1|AAI05027.1|  237|Homo sapiens REX2, RNA exonuclease 2...   184   2e-46
BC105024-1|AAI05025.1|  237|Homo sapiens small fragment nuclease...   184   2e-46
AK223200-1|BAD96920.1|  237|Homo sapiens small fragment nuclease...   184   2e-46
AF151872-1|AAD34109.1|  205|Homo sapiens CGI-114 protein protein.     184   2e-46
CR533500-1|CAG38531.1|  237|Homo sapiens DKFZP566E144 protein.        184   3e-46
BC003502-1|AAH03502.1|   79|Homo sapiens REXO2 protein protein.        66   1e-10

>BC107887-1|AAI07888.1|  237|Homo sapiens REXO2 protein protein.
          Length = 237

 Score =  184 bits (448), Expect = 2e-46
 Identities = 80/146 (54%), Positives = 108/146 (73%)
 Frame = +1

Query: 211 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 390
           +AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 391 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSXYMDRMXLIKYMPKL 570
             HG++GLT+A  +S  +L +AE   L FV    P  +CPLAGNS + D+  L KYMP+ 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 571 XDYLHYRCIDVSTVKELAKRWYPRXY 648
             +LHYR IDVSTVKEL +RWYP  Y
Sbjct: 159 MKHLHYRIIDVSTVKELCRRWYPEEY 184


>BC105026-1|AAI05027.1|  237|Homo sapiens REX2, RNA exonuclease 2
           homolog (S. cerevisiae) protein.
          Length = 237

 Score =  184 bits (448), Expect = 2e-46
 Identities = 80/146 (54%), Positives = 108/146 (73%)
 Frame = +1

Query: 211 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 390
           +AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 391 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSXYMDRMXLIKYMPKL 570
             HG++GLT+A  +S  +L +AE   L FV    P  +CPLAGNS + D+  L KYMP+ 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 571 XDYLHYRCIDVSTVKELAKRWYPRXY 648
             +LHYR IDVSTVKEL +RWYP  Y
Sbjct: 159 MKHLHYRIIDVSTVKELCRRWYPEEY 184


>BC105024-1|AAI05025.1|  237|Homo sapiens small fragment nuclease
           protein.
          Length = 237

 Score =  184 bits (448), Expect = 2e-46
 Identities = 80/146 (54%), Positives = 108/146 (73%)
 Frame = +1

Query: 211 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 390
           +AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 391 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSXYMDRMXLIKYMPKL 570
             HG++GLT+A  +S  +L +AE   L FV    P  +CPLAGNS + D+  L KYMP+ 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 571 XDYLHYRCIDVSTVKELAKRWYPRXY 648
             +LHYR IDVSTVKEL +RWYP  Y
Sbjct: 159 MKHLHYRIIDVSTVKELCRRWYPEEY 184


>AK223200-1|BAD96920.1|  237|Homo sapiens small fragment nuclease
           variant protein.
          Length = 237

 Score =  184 bits (448), Expect = 2e-46
 Identities = 80/146 (54%), Positives = 108/146 (73%)
 Frame = +1

Query: 211 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 390
           +AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 391 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSXYMDRMXLIKYMPKL 570
             HG++GLT+A  +S  +L +AE   L FV    P  +CPLAGNS + D+  L KYMP+ 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 571 XDYLHYRCIDVSTVKELAKRWYPRXY 648
             +LHYR IDVSTVKEL +RWYP  Y
Sbjct: 159 MKHLHYRIIDVSTVKELCRRWYPEEY 184


>AF151872-1|AAD34109.1|  205|Homo sapiens CGI-114 protein protein.
          Length = 205

 Score =  184 bits (448), Expect = 2e-46
 Identities = 80/146 (54%), Positives = 108/146 (73%)
 Frame = +1

Query: 211 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 390
           +AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I  P+  L+ M++WCK
Sbjct: 7   MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 66

Query: 391 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSXYMDRMXLIKYMPKL 570
             HG++GLT+A  +S  +L +AE   L FV    P  +CPLAGNS + D+  L KYMP+ 
Sbjct: 67  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 126

Query: 571 XDYLHYRCIDVSTVKELAKRWYPRXY 648
             +LHYR IDVSTVKEL +RWYP  Y
Sbjct: 127 MKHLHYRIIDVSTVKELCRRWYPEEY 152


>CR533500-1|CAG38531.1|  237|Homo sapiens DKFZP566E144 protein.
          Length = 237

 Score =  184 bits (447), Expect = 3e-46
 Identities = 80/146 (54%), Positives = 107/146 (73%)
 Frame = +1

Query: 211 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 390
           +AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 391 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSXYMDRMXLIKYMPKL 570
             HG +GLT+A  +S  +L +AE   L FV    P  +CPLAGNS + D+  L KYMP+ 
Sbjct: 99  EHHGRSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 571 XDYLHYRCIDVSTVKELAKRWYPRXY 648
             +LHYR IDVSTVKEL +RWYP  Y
Sbjct: 159 MKHLHYRIIDVSTVKELCRRWYPEEY 184


>BC003502-1|AAH03502.1|   79|Homo sapiens REXO2 protein protein.
          Length = 79

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 27/40 (67%), Positives = 36/40 (90%)
 Frame = +1

Query: 211 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATG 330
           +AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A G
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEG 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,071,300
Number of Sequences: 237096
Number of extensions: 1550976
Number of successful extensions: 2539
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2539
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)