Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I21
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26970.1 68415.m03235 exonuclease family protein contains exo...   139   1e-33
At5g44980.1 68418.m05516 F-box family protein contains F-box dom...    30   1.5  

>At2g26970.1 68415.m03235 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 222

 Score =  139 bits (337), Expect = 1e-33
 Identities = 65/144 (45%), Positives = 94/144 (65%)
 Frame = +1

Query: 208 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWC 387
           D  Q +VW+DLEMTGL++E D I+EIAC++T+  L     GPD+V+   +  L+KM++WC
Sbjct: 41  DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWC 100

Query: 388 KVQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSXYMDRMXLIKYMPK 567
           +  HG +GLT+  L S  +  EAE+ +++FV  HV      LAGNS Y+D + L KYMP+
Sbjct: 101 QTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPE 160

Query: 568 LXDYLHYRCIDVSTVKELAKRWYP 639
           L     +  +DVS+VK L  RW+P
Sbjct: 161 LAALFPHILVDVSSVKALCARWFP 184


>At5g44980.1 68418.m05516 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 435

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 253 LDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCKVQHGETG-LTEACL 429
           +D +  +I +   LV+    NV     D V++LP + + K+ N C   HGE G L    L
Sbjct: 120 VDFKRQNIYKSKTLVSLKLHNVELKNSDFVVSLPCLKILKLENIC---HGEDGPLVVEKL 176

Query: 430 KSDTSLAEAERIILKF 477
            S  S+ E   +I  F
Sbjct: 177 ISGCSVLEDLELIRPF 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,361,787
Number of Sequences: 28952
Number of extensions: 225833
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)