Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I18
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 95 5e-21
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 89 3e-19
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.073
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 30 0.22
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.90
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 28 0.90
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.2
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 27 1.6
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 27 1.6
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.8
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 4.8
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 6.3
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 6.3
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.3
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.3
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.4
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 8.4
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.4
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.4
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 8.4
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 95.1 bits (226), Expect = 5e-21
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +3
Query: 198 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 371
P KV K MG +I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R
Sbjct: 50 PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSA 109
Query: 372 LRFNTRVRFEERYKSGKNKWFFQKLRF 452
R + FEE+Y+SGK+ WFF LRF
Sbjct: 110 ARKTVKKTFEEKYQSGKSAWFFTPLRF 136
Score = 42.7 bits (96), Expect = 3e-05
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = +1
Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGT 147
M KI+KPGKV L+ GR+AG+K ++++ D+G+
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGS 33
Score = 30.3 bits (65), Expect = 0.17
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 158 PYGHAFVAGIDRYP 199
P+GHA VAG++RYP
Sbjct: 37 PFGHAVVAGVERYP 50
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 89.0 bits (211), Expect = 3e-19
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 198 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 371
P KV K MG +I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R
Sbjct: 50 PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSA 109
Query: 372 LRFNTRVRFEERYKSGKNKWFFQKLRF 452
+ + FEE+Y++GK+ WFF LRF
Sbjct: 110 AKKTVKNTFEEKYQTGKSAWFFTPLRF 136
Score = 46.4 bits (105), Expect = 2e-06
Identities = 18/33 (54%), Positives = 27/33 (81%)
Frame = +1
Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGT 147
M KI+KPGKV LV GR+AG+K ++++N D+G+
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGS 33
Score = 30.3 bits (65), Expect = 0.17
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 158 PYGHAFVAGIDRYP 199
P+GHA VAG++RYP
Sbjct: 37 PFGHAVVAGVERYP 50
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.073
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 40 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 141
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 29.9 bits (64), Expect = 0.22
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = -3
Query: 407 PLFKTYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLVDFI 228
P+++ + + T S + CA+F E N + WH YNL R Y + D +
Sbjct: 749 PVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNV 805
Query: 227 LSHPLVHFXGGTCRY 183
P G C Y
Sbjct: 806 SDLPQTRLCYGACVY 820
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.90
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 222 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 356
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.9 bits (59), Expect = 0.90
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 84 QHYFTRLHYFAHLGGIFPLLVD 19
Q YFT ++ F G +FP +VD
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVD 824
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 55 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 138
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 165 GMPSSLVSTGTPGKVHKRMGKNKIHKRSKIK 257
G P+SLVS+ T K+H +G+ I K S+++
Sbjct: 184 GSPTSLVSSNTASKLH--LGRKDIVKLSELR 212
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 255 LSWTSCGFYSFPSSCALXRGYLSIPATKACPYGLXGGTFVVI-LDYDSLATRVP 97
L W S + S SCA + +G G+F+ ++Y S +T VP
Sbjct: 131 LLWASTAYISLSYSCANQKSQFIATQWTILAFGSTVGSFIAFGINYHSTSTGVP 184
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 315 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 449
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 353 VFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLY 252
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 6.3
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 201 GKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD---FSFEKFSAKDLKDPAKRKK 371
G V + +G +IHK PF N N +TV F+ E + L D K K
Sbjct: 286 GLVTQPLGLFRIHKLPLALPFTNHANSNEAGDLSFTVSKRRFTIEPWVLPPLDDEQKDTK 345
Query: 372 L 374
+
Sbjct: 346 I 346
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/53 (24%), Positives = 21/53 (39%)
Frame = -3
Query: 185 YQRRRHARMAXSEVPSS*FLTTIALRPAYRPLRTSTTLPGFIILPILEGYSLY 27
Y+ + E+P + F T+ AY P S T+ G + G +Y
Sbjct: 679 YRNPNAETVKLEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 204 KVHKRMGKNKIHKRSKIKPFVKVV 275
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 309 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 425
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 309 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 407
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 226 FPILLCTXPGVPVDTSDEGMPVW 158
F LL P + V ++EGMP W
Sbjct: 164 FSALLLDSPTINVFNNEEGMPSW 186
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 326 FKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSH 219
F V I C H V + + ++ GP ++F++ H
Sbjct: 90 FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 226 FPILLCTXPGVPVDTSDEGMPVW 158
F LL P + V ++EGMP W
Sbjct: 164 FSALLLDSPTINVFNNEEGMPSW 186
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 226 FPILLCTXPGVPVDTSDEGMPVW 158
F LL P + V ++EGMP W
Sbjct: 165 FSALLLDSPTINVFNNEEGMPSW 187
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 252 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 389
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,555
Number of Sequences: 5004
Number of extensions: 40006
Number of successful extensions: 141
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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