Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I18
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)             108   2e-24
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)                 28   4.9  
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)                   27   6.5  
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               27   8.6  
SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
          Length = 168

 Score =  108 bits (260), Expect = 2e-24
 Identities = 54/85 (63%), Positives = 62/85 (72%), Gaps = 2/85 (2%)
 Frame = +3

Query: 198 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKK 371
           P KV KRMGK +  KRSK+KPFVKV NYNHLMPTRY+VD   +K    KD+ +DPA +KK
Sbjct: 50  PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109

Query: 372 LRFNTRVRFEERYKSGKNKWFFQKL 446
                +   EERYKSGKNKWFFQKL
Sbjct: 110 ALREVKSTLEERYKSGKNKWFFQKL 134



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 24/34 (70%), Positives = 31/34 (91%)
 Frame = +1

Query: 49  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTS 150
           MGK +K GKVVLVL GRYAG+KA+++KNYD+G+S
Sbjct: 1   MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSS 34



 Score = 35.5 bits (78), Expect = 0.025
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 155 KPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQDKAF 262
           KPYGHA VAG+ RYP    +  GK+   +  + K F
Sbjct: 36  KPYGHALVAGVARYPLKVTKRMGKKRTAKRSKVKPF 71


>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 336 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 452
           +KDL  + P   +K  FN  +  E R++ G  K F+++LRF
Sbjct: 2   SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42


>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
          Length = 383

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 324 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 449
           ++ S  D +D +KRK++RF     FE   + YK+      FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281


>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
          Length = 105

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 34  EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 138
           ++P+ ++GK  K G  V V+ GRY G   ++V+  D
Sbjct: 58  DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 333 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 449
           SAK+L++  +RK+  +NT    E RY+  K K   Q  R
Sbjct: 562 SAKELEEELERKREDYNTAAD-ERRYQMAKKKDTLQATR 599


>SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 186 STGTPGKVHKRMGKNKIHKRSKIKPFVKVVNYNHL 290
           STG PG  HKR G + +       P+++ V+Y H+
Sbjct: 142 STGNPGLEHKRSGHSLV-----FLPYMEGVSYRHV 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,186,920
Number of Sequences: 59808
Number of extensions: 305192
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)