Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I18
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 112 2e-25
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 112 2e-25
U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical pr... 33 0.087
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.4
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 3.3
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 3.3
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 3.3
U28991-12|AAA68386.2| 550|Caenorhabditis elegans Hypothetical p... 27 5.7
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 7.6
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 7.6
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 7.6
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 27 10.0
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 27 10.0
L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical p... 27 10.0
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 27 10.0
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 112 bits (269), Expect = 2e-25
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +3
Query: 198 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 371
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 372 LRFNTRVRFEERYKSGKNKWFFQKLRF 452
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 61.3 bits (142), Expect = 4e-10
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +1
Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTS 150
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG S
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVS 34
Score = 31.1 bits (67), Expect = 0.46
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 155 KPYGHAFVAGIDRYPRXSAQEDGKE 229
+ Y HA +AGIDRYP ++ GK+
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKK 60
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 112 bits (269), Expect = 2e-25
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +3
Query: 198 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 371
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 372 LRFNTRVRFEERYKSGKNKWFFQKLRF 452
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 61.3 bits (142), Expect = 4e-10
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +1
Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTS 150
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG S
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVS 34
Score = 31.1 bits (67), Expect = 0.46
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 155 KPYGHAFVAGIDRYPRXSAQEDGKE 229
+ Y HA +AGIDRYP ++ GK+
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKK 60
>U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical
protein F59A6.4 protein.
Length = 752
Score = 33.5 bits (73), Expect = 0.087
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +3
Query: 90 KWPVRGSQGYRSQELRRRYLRXSHTGMPSSLVSTGTPGKVHKRMGKNKIHKRSKIKPFVK 269
K+ V G G +++RR+YL S + S V+ T + +H+ IKP
Sbjct: 515 KYVVMGLVGPSLEDIRRKYLLGSFSKHTSFNVAIQTVTALQDLHSIGYLHR--DIKPANY 572
Query: 270 VVNYNHLMPTRYTVDFSFEK-FSAKDLKDPAKRKKLRFNTRVRF 398
V T Y +DF K + ++ + KRKK++F +R+
Sbjct: 573 AVGLEDREDTVYMLDFGIAKLYVDENGEHKVKRKKVKFLGTLRY 616
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 55 KIMKPGKVVLVLSGRYAGRKAIVVK 129
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -1
Query: 400 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 305
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -1
Query: 400 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 305
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -1
Query: 400 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 305
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
>U28991-12|AAA68386.2| 550|Caenorhabditis elegans Hypothetical
protein F08F8.2 protein.
Length = 550
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 67 PGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACL 174
P VL LSG K KN+ EG + CL
Sbjct: 307 PEMTVLALSGNLCVDKKAAAKNWTEGRGRSVVAECL 342
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 201 GKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 329
G+ H N+ KR KI + YNHL+P T+D+S K
Sbjct: 391 GQNHVATHLNRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 228 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 329
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 228 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 329
NK KR KI K YNHL+P T+D+S K
Sbjct: 400 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 228 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 329
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 249 WTSCGFY-SFPSSCALXRGYLSIPAT 175
W +C F+ + P SC L G ++ PAT
Sbjct: 112 WDNCPFFKNCPLSCGLCTGNVTTPAT 137
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -3
Query: 395 TYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLV 237
TYS + L ++V ++ A V +T + + I++NLD LY+ P +
Sbjct: 367 TYSEMGANL-NATQVAEISTILINSANVPGLTAENSMAILHNLDNMLYVSPTI 418
>L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical
protein F10E9.10 protein.
Length = 203
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 258 ALSWTSCGFYSFPSSCALXRGYLSIPATKACPYGLXGGTFVVI 130
+ SW Y SSC L ++ +P+ C L GG VI
Sbjct: 76 SFSWLIIAIYYSSSSCVLTFNFMEMPSAVLC--SLLGGISSVI 116
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -3
Query: 395 TYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLV 237
TYS + L ++V ++ A V +T + + I++NLD LY+ P +
Sbjct: 349 TYSEMGANL-NATQVAEISTILINSANVPGLTAENSMAILHNLDNMLYVSPTI 400
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,088,117
Number of Sequences: 27780
Number of extensions: 222500
Number of successful extensions: 642
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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