Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I18
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 87 8e-18
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 85 3e-17
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 84 4e-17
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 36 0.020
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 33 0.14
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 33 0.14
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 30 0.75
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 29 1.7
At1g66070.1 68414.m07499 translation initiation factor-related s... 29 1.7
At4g35120.1 68417.m04992 kelch repeat-containing F-box family pr... 28 4.0
At3g63310.1 68416.m07121 expressed protein low similarity to N-m... 28 4.0
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi... 27 9.3
At2g24080.1 68415.m02876 F-box family protein-related similar to... 27 9.3
At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3... 27 9.3
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 86.6 bits (205), Expect = 8e-18
Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +3
Query: 198 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKL 374
P KV ++ K K+S++K F+K+VNY HLMPTRYT+D ++ + D LK K+
Sbjct: 50 PSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTA 109
Query: 375 RFNTRVRFEERYKSGKNKWFFQKLRF 452
+ + EER+K+GKN+WFF KLRF
Sbjct: 110 LKEAKAKLEERFKTGKNRWFFTKLRF 135
Score = 51.6 bits (118), Expect = 3e-07
Identities = 21/50 (42%), Positives = 34/50 (68%)
Frame = +1
Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACLRRWYRQVP 198
M K +K K V++L GRYAG+KA+++K++D+GTS + CL ++ P
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYP 50
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 161 YGHAFVAGIDRYPRXSAQEDGKE*NPQEVQDKAF 262
YGH VAG+ +YP ++D + ++ + K F
Sbjct: 38 YGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCF 71
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 85.0 bits (201), Expect = 3e-17
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +3
Query: 198 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKL 374
P KV ++ K K+S++K F+K+VNY HLMPTRYT+D ++ + D L+ K+
Sbjct: 50 PSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAA 109
Query: 375 RFNTRVRFEERYKSGKNKWFFQKLRF 452
+ + EER+K+GKN+WFF KLRF
Sbjct: 110 LKEAKAKLEERFKTGKNRWFFTKLRF 135
Score = 47.6 bits (108), Expect = 5e-06
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +1
Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACLRRWYRQVP 198
M K +K K V++L GRYAG+KA+++K++D+G + CL ++ P
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYP 50
Score = 31.5 bits (68), Expect = 0.33
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 155 KPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQDKAF 262
+PYGH VAG+ +YP ++D + ++ + K F
Sbjct: 36 RPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCF 71
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 84.2 bits (199), Expect = 4e-17
Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 198 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDLKDPAKRKKL 374
P KV ++ K K+S++K F KV+NY H+MPTRYT+D + SA + K+
Sbjct: 50 PSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTA 109
Query: 375 RFNTRVRFEERYKSGKNKWFFQKLRF 452
+ +FEER+K+GKN+WFF KLRF
Sbjct: 110 LKEAKAKFEERFKTGKNRWFFTKLRF 135
Score = 54.4 bits (125), Expect = 4e-08
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +1
Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACLRRWYRQVP 198
M K MKPGK V++L GRY G+KA++VK++D+GT + CL ++ P
Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYP 50
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 155 KPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQDKAF 262
K YGH VAG+ +YP ++D + ++ + K F
Sbjct: 36 KKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCF 71
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 35.5 bits (78), Expect = 0.020
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 19 VNE*REYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 144
VN + P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 75 VNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.14
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 40 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 144
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.14
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 40 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 144
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 30.3 bits (65), Expect = 0.75
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 378 FNTRVRFEERYKSGKNKWFF 437
+N R + E+RYKS K KWF+
Sbjct: 58 YNKRNKKEQRYKSPKGKWFY 77
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding transcription
factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
[Homo sapiens], GB:P53569 [Mus musculus]
Length = 1056
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +3
Query: 216 RMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKK 371
R K K KR + PF + Y HL+ D K K +P K+KK
Sbjct: 1000 RSKKKKKEKRKRKSPFASLEEYKHLIDQDEKED---SKTKRKATSEPTKKKK 1048
>At1g66070.1 68414.m07499 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 226
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 249 KIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 428
+IKP+ K +Y L+ T + S A D+KD A N +++ E+ +GK K
Sbjct: 139 RIKPYEKSYHYIALLKT--IMRLSLTNMKAADVKDVASSITTIANEKLKAEKEAAAGKKK 196
>At4g35120.1 68417.m04992 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 389
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 261 KALSWTSCGFYSFPSSCALXRGYLSIPATKACPY 160
++LS S FYS SS + I AT+ CPY
Sbjct: 48 RSLSLVSKSFYSLLSSTEIYAARSHIGATEPCPY 81
>At3g63310.1 68416.m07121 expressed protein low similarity to
N-methyl-D-aspartate receptor-associated protein
[Drosophila melanogaster] GI:567104; contains Pfam
profile PF01027: Uncharacterized protein family UPF0005
Length = 239
Score = 27.9 bits (59), Expect = 4.0
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 412 LYLSSKRTRVLKRSFLRLAGSFRSFALNFS-KLKSTV*RVGIK*L*FTTLTKGFILDLLW 236
LY + L+ SF+R S S L + + +TV +V + FTT T GF L +L
Sbjct: 15 LYPMMSESPELRWSFIRKVYSIISIQLLVTIAVAATVVKVHSISVFFTTTTAGFALYILL 74
Query: 235 ILFFPILLC 209
IL I++C
Sbjct: 75 ILTPLIVMC 83
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 611
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 192 GTPGKVHKRMGKNKIHKRSKIKPFVKVVNYN--HLMPTRYTVDFSFEKFSAKDLK 350
GT + K G+N + +K + F ++V+ HL+P YT F E SA+ L+
Sbjct: 517 GTANMMLKVYGRNDMFSEAK-ELFEEIVSRKETHLVPNEYTYSFMLEA-SARSLQ 569
>At2g24080.1 68415.m02876 F-box family protein-related similar to
F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 374
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 78 YFTRLHYFAHLGGIFPLLVDI 16
YFTR F H G P LVDI
Sbjct: 324 YFTRNDRFGHKDGSIPCLVDI 344
>At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3.3)
plant glutamate receptor family, PMID:11379626
Length = 933
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 410 VPLFKTYSRVETQLLTFSRVFQVFCAEFFKAEVNCI 303
VPL +Y +Q+ +F+ FC + F A VN +
Sbjct: 470 VPLRVSYKEFVSQIRGTENMFKGFCIDVFTAAVNLL 505
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,486,102
Number of Sequences: 28952
Number of extensions: 204886
Number of successful extensions: 579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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