Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I17
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    68   8e-13
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    68   8e-13
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   9.5  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.5  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   9.5  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 31/64 (48%), Positives = 44/64 (68%)
 Frame = +2

Query: 257 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 436
           GV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RD
Sbjct: 71  GVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRD 130

Query: 437 LDRI 448
           LDRI
Sbjct: 131 LDRI 134



 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 25/50 (50%), Positives = 35/50 (70%)
 Frame = +3

Query: 45  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 194
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDP
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50



 Score = 33.1 bits (72), Expect = 0.027
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 199 WFYVRCAAILRHIYIR 246
           W+YVR AAI RHIY+R
Sbjct: 52  WYYVRAAAIARHIYLR 67


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 31/64 (48%), Positives = 44/64 (68%)
 Frame = +2

Query: 257 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 436
           GV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RD
Sbjct: 71  GVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRD 130

Query: 437 LDRI 448
           LDRI
Sbjct: 131 LDRI 134



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 26/50 (52%), Positives = 35/50 (70%)
 Frame = +3

Query: 45  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 194
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDP
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50



 Score = 33.1 bits (72), Expect = 0.027
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 199 WFYVRCAAILRHIYIR 246
           W+YVR AAI RHIY+R
Sbjct: 52  WYYVRAAAIARHIYLR 67


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 280 DLGDSLDSXQVSECKYDEGWQHNA 209
           + GDS +  ++ +C+  +GW H A
Sbjct: 338 ECGDSTEDSEMFQCERCDGWVHCA 361


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 436 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 344
           VSS  C E   T     L+ +N ++C+  LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
 Frame = +3

Query: 123 KVKVPEHMDLVKTARFKELAP----YDPXLVLCALCCHPSSYLHSLTXLESRLSPRSLV- 287
           K+   EH  LV    ++   P     D  L +  +   P  Y+ + +   S ++      
Sbjct: 223 KITKGEHSLLVPEELYRSNYPCPQNIDQFLYMIKVLSAPCLYIETFSFPISTINQLFKAH 282

Query: 288 GANVMELHLHISAGHQAVLHARLCNRW 368
           G +V +L+L + + H   L +R C +W
Sbjct: 283 GMSVEQLNLFLKSIHYIGLCSRFCKQW 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,754
Number of Sequences: 5004
Number of extensions: 38082
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)