Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I17
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...    79   3e-15
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349...    29   3.1  
04_04_0898 + 29220860-29221462,29221547-29222545                       28   4.1  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   4.1  
10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339     27   7.2  
03_06_0488 - 34281623-34283431                                         27   9.5  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    27   9.5  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 33/64 (51%), Positives = 48/64 (75%)
 Frame = +2

Query: 257 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 436
           GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR++T+QGRRD
Sbjct: 74  GVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRD 133

Query: 437 LDRI 448
           LD++
Sbjct: 134 LDQV 137



 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 29/46 (63%), Positives = 38/46 (82%)
 Frame = +3

Query: 57  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 194
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDP
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDP 53


>10_08_0340 -
           16934317-16934478,16934569-16934745,16934842-16934940,
           16935025-16935225,16935389-16935409,16935554-16935661,
           16935749-16936130,16936693-16936912,16938673-16938827,
           16938960-16939183,16939648-16939707
          Length = 602

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 133 YLSTWIL*RQLASKSWLRMTLXWFYVRCAAILRHIY--IRSPXWS 261
           Y+S W + R +   SWL M L W Y     + R++   IR   W+
Sbjct: 297 YVSRWYM-RMMWPLSWLSMVLTWTYGSSFTVERNVMKKIRMQSWA 340


>04_04_0898 + 29220860-29221462,29221547-29222545
          Length = 533

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 219 CHPSSYLHSLTXLESRLSPRSLVGANV-MELHLHISAGHQAVLHARLCNRW 368
           C P +  +     + RL+  S  G +V + +H HI   H     A+L +RW
Sbjct: 100 CSPGNQFNDADSSDVRLTLTSKDGLSVTLCVHRHILVAHSRFFAAKLSDRW 150


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 164 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 42
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


>10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339
          Length = 697

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 230 VIFTFAHLXGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLV--EKVQDG 403
           +I  FA     +T   +F   +RNG   +HF  SS   A   + +LE  K V    ++ G
Sbjct: 237 LIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSG 296

Query: 404 GRILTTQGRRDLD 442
            R+    G   LD
Sbjct: 297 ERLSAFVGNTILD 309


>03_06_0488 - 34281623-34283431
          Length = 602

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 135 PEHMDLVKTARFKELAPYDPXLVLCALCCHPSSYLHSLTXLESRLSPRSLVGANV 299
           P  +D + TA  +   P D  L    +  H +S +HSL    +   P  L GA V
Sbjct: 69  PALLDPLVTALLRPSVPLDAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVV 123


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 404 HRPELSQQASMPPTIAKPCVQYCLMTCRN 318
           H  +  +  + P TIA+  +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,722,006
Number of Sequences: 37544
Number of extensions: 268403
Number of successful extensions: 728
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)