Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I17
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          68   6e-12
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   3.2  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_31611| Best HMM Match : Peptidase_M16_C (HMM E-Value=0.0021)        28   4.2  
SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)                    27   7.3  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 32/57 (56%), Positives = 39/57 (68%)
 Frame = +2

Query: 278 IFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 448
           I  GRK  G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 32  IRAGRKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +3

Query: 117 TGKVKVPEHMDLVKTARFKELAPYDP 194
           +G +K+P+ +DLVKT +FKELAPYDP
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDP 27


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 316 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 408
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 316 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 408
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 316 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 408
           TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 68  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 187
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_31611| Best HMM Match : Peptidase_M16_C (HMM E-Value=0.0021)
          Length = 398

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 90  KTVAAHLKKT--GKVKVPEHMDLVKTARFKELAP-YDPXLVLCALCCHPS 230
           K+V++ L +    KV      DL +  + + LAP +DP    CA+CC+PS
Sbjct: 268 KSVSSWLARDLLNKVSQVTMSDLERVGQ-RYLAPLFDPVTSWCAVCCNPS 316


>SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)
          Length = 204

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 480 RLSNKSLYFNFMLIKI*N 533
           R+ NKS++FNF ++KI N
Sbjct: 48  RVENKSIFFNFQVLKIAN 65


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 316  TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 423
            T+   I   C +G+A++G      +++G WS S+ T
Sbjct: 913  TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,533
Number of Sequences: 59808
Number of extensions: 315204
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)